RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 DDX3XO00571 662 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS53-219ENST00000576019 EOMESO95936 686 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 CD4P01730 458 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 CSTBP04080 98 aaKnown RBP6.72□□□□□ -1.33
VPS53-219ENST00000576019 CYP17A1P05093 508 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 MYF5P13349 255 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 NID1P14543 1247 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 CAPN3P20807 821 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 MCCP23508 829 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 GMPRP36959 345 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 TERF1P54274 439 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 MPP1Q00013 466 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 ZNF543Q08ER8 600 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 CDK5R2Q13319 367 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 MOGSQ13724 837 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 SEC23AQ15436 765 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 C3orf36Q3SXR2 165 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 PITRM1Q5JRX3 1037 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 FKBP15Q5T1M5 1219 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 EP400NLQ6ZTU2 488 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 CHSY3Q70JA7 882 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 CCDC33Q8N5R6 958 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 SH3RF2Q8TEC5 729 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 SNRNP27Q8WVK2 155 aaKnown RBP6.72□□□□□ -1.33
VPS53-219ENST00000576019 AUTS2Q8WXX7 1259 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 NANOS1Q8WY41 292 aaKnown RBP6.72□□□□□ -1.33
VPS53-219ENST00000576019 PIGBQ92521 554 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 ARL8AQ96BM9 186 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 ERO1AQ96HE7 468 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 PSMG3-AS1Q96PY0 264 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 C22orf23Q9BZE7 217 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 CD244Q9BZW8 370 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 SEMA6BQ9H3T3 888 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 PRDM12Q9H4Q4 367 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 ACSS3Q9H6R3 686 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 KIAA1586Q9HCI6 787 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 ALG13Q9NP73 1137 aaKnown RBP6.72□□□□□ -1.33
VPS53-219ENST00000576019 DCP1AQ9NPI6 582 aaPredicted RBP6.72□□□□□ -1.33
VPS53-219ENST00000576019 STARD7Q9NQZ5 370 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 BLOC1S4Q9NUP1 217 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 GRHPRQ9UBQ7 328 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 KCNG1Q9UIX4 513 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 GJD2Q9UKL4 321 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 B3GALT1Q9Y5Z6 326 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 REV3LO60673 3130 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 ALPK3Q96L96 1907 aa6.72□□□□□ -1.33
VPS53-219ENST00000576019 MYH14Q7Z406 1995 aaKnown RBP6.71□□□□□ -1.33
VPS53-219ENST00000576019 COL4A5P29400 1685 aa6.71□□□□□ -1.33
VPS53-219ENST00000576019 TRBV23OR9-2A0A075B6M9 112 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.71□□□□□ -1.34
VPS53-219ENST00000576019 EIF3FO00303 357 aaPredicted RBP6.71□□□□□ -1.34
VPS53-219ENST00000576019 ADAMTS3O15072 1205 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 DYNC1LI2O43237 492 aaPredicted RBP6.71□□□□□ -1.34
VPS53-219ENST00000576019 HTRA2O43464 458 aaPredicted RBP6.71□□□□□ -1.34
VPS53-219ENST00000576019 MTHFD2P13995 350 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 TSHRP16473 764 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 EDNRBP24530 442 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 FPR2P25090 351 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 MRPS9P82933 396 aaKnown RBP6.71□□□□□ -1.34
VPS53-219ENST00000576019 NUCB1Q02818 461 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 CCDC96Q2M329 555 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 MUM1Q2TAK8 710 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 PAN2Q504Q3 1202 aaKnown RBP6.71□□□□□ -1.34
VPS53-219ENST00000576019 ZBTB41Q5SVQ8 909 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 FAAH2Q6GMR7 532 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 DLK2Q6UY11 383 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 C1orf229Q6ZS94 237 aaPredicted RBP6.71□□□□□ -1.34
VPS53-219ENST00000576019 FAM43BQ6ZT52 329 aaPredicted RBP6.71□□□□□ -1.34
VPS53-219ENST00000576019 TBC1D1Q86TI0 1168 aaPredicted RBP6.71□□□□□ -1.34
VPS53-219ENST00000576019 OXR1Q8N573 874 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 FAM26EQ8N5C1 309 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 ZNF527Q8NB42 609 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 DAGLBQ8NCG7 672 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 KLHDC4Q8TBB5 520 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 DCAF11Q8TEB1 546 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 LTV1Q96GA3 475 aaPredicted RBP6.71□□□□□ -1.34
VPS53-219ENST00000576019 SLC26A6Q9BXS9 759 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 BTBD1Q9H0C5 482 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 POFUT1Q9H488 388 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 ARMT1Q9H993 441 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 RASSF1Q9NS23 344 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 AP5S1Q9NUS5 200 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 GPRC5DQ9NZD1 345 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 USP36Q9P275 1121 aaKnown RBP6.71□□□□□ -1.34
VPS53-219ENST00000576019 DPP7Q9UHL4 492 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 SRPK3Q9UPE1 567 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 MAP3K19Q56UN5 1328 aa6.71□□□□□ -1.34
VPS53-219ENST00000576019 FGF10O15520 208 aaPredicted RBP6.7□□□□□ -1.34
VPS53-219ENST00000576019 ZNF205O95201 554 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 SYPP08247 313 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 DHRS4L1P0CG22 281 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 MAGEA10P43363 369 aaPredicted RBP6.7□□□□□ -1.34
VPS53-219ENST00000576019 CDK17Q00537 523 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 SPIRE1Q08AE8 756 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 DUSP4Q13115 394 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 CNGB1Q14028 1251 aaPredicted RBP6.7□□□□□ -1.34
VPS53-219ENST00000576019 MYBPC2Q14324 1141 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 SNX17Q15036 470 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 TAF5Q15542 800 aa6.7□□□□□ -1.34
VPS53-219ENST00000576019 TAF12Q16514 161 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms