RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 ZNF408Q9H9D4 720 aa15.1■□□□□ 0.01
VPS33B-208ENST00000574755 EFCC1Q9HA90 598 aa15.1■□□□□ 0.01
VPS33B-208ENST00000574755 PNMA3Q9UL41 463 aa15.1■□□□□ 0.01
VPS33B-208ENST00000574755 ZSCAN5CA6NGD5 496 aaPredicted RBP15.1■□□□□ 0.01
VPS33B-208ENST00000574755 GLTPD2A6NH11 291 aa15.1■□□□□ 0.01
VPS33B-208ENST00000574755 KRIT1O00522 736 aa15.1■□□□□ 0.01
VPS33B-208ENST00000574755 ATMINO43313 823 aaPredicted RBP15.1■□□□□ 0.01
VPS33B-208ENST00000574755 LGR5O75473 907 aa15.1■□□□□ 0.01
VPS33B-208ENST00000574755 CLSTN1O94985 981 aa15.1■□□□□ 0.01
VPS33B-208ENST00000574755 SRGAP2CP0DJJ0 459 aa15.1■□□□□ 0.01
VPS33B-208ENST00000574755 SEZ6Q53EL9 994 aa15.1■□□□□ 0.01
VPS33B-208ENST00000574755 LDLRAD1Q5T700 205 aa15.1■□□□□ 0.01
VPS33B-208ENST00000574755 CCDC62Q6P9F0 684 aa15.1■□□□□ 0.01
VPS33B-208ENST00000574755 CHORDC1Q9UHD1 332 aaPredicted RBP15.1■□□□□ 0.01
VPS33B-208ENST00000574755 ADGRA2Q96PE1 1338 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 SCN4AP35499 1836 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 ESYT3A0FGR9 886 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 DDX3YO15523 660 aaKnown RBP15.09■□□□□ 0.01
VPS33B-208ENST00000574755 RAD51CO43502 376 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 GAS2O43903 313 aaKnown RBP15.09■□□□□ 0.01
VPS33B-208ENST00000574755 LAMTOR4Q0VGL1 99 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 MXD4Q14582 209 aaPredicted RBP15.09■□□□□ 0.01
VPS33B-208ENST00000574755 ZPBP2Q6X784 338 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 EXOC8Q8IYI6 725 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 RNF149Q8NC42 400 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 DDX1Q92499 740 aaKnown RBP15.09■□□□□ 0.01
VPS33B-208ENST00000574755 TCHPQ9BT92 498 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 GDF3Q9NR23 364 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 TRPC6Q9Y210 931 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 ALG6Q9Y672 507 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 IQCA1LA6NCM1 817 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 TTLL13PA6NNM8 815 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 ZBTB42B2RXF5 422 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 TTLL4Q14679 1199 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 PLCB4Q15147 1175 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 TCEAL1Q15170 157 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 TMEM63BQ5T3F8 832 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 SPOPLQ6IQ16 392 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 C11orf63Q6NUN7 778 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 EMBQ6PCB8 327 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 ZBTB8OSQ8IWT0 167 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 SHCBP1Q8NEM2 672 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 IFT81Q8WYA0 676 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 CGRRF1Q99675 332 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 MRPL4Q9BYD3 311 aaKnown RBP15.09■□□□□ 0.01
VPS33B-208ENST00000574755 CARD9Q9H257 536 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 MED4Q9NPJ6 270 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 PDGFCQ9NRA1 345 aa15.09■□□□□ 0.01
VPS33B-208ENST00000574755 DIS3Q9Y2L1 958 aaKnown RBP15.09■□□□□ 0.01
VPS33B-208ENST00000574755 ASB14A6NK59 587 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 TMEM110-MUSTN1A8MSY1 372 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 CCDC188H7C350 402 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 MSCO60682 206 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 VNN1O95497 513 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 FGGP02679 453 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 CARSP49589 748 aaKnown RBP15.08■□□□□ 0
VPS33B-208ENST00000574755 MKRN4PQ13434 485 aaPredicted RBP15.08■□□□□ 0
VPS33B-208ENST00000574755 DCAF12L1Q5VU92 463 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 ZBTB33Q86T24 672 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 RHPN2Q8IUC4 686 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 MORC4Q8TE76 937 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 ZNF653Q96CK0 615 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 SMARCAD1Q9H4L7 1026 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 VPS18Q9P253 973 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 CLEC11AQ9Y240 323 aa15.08■□□□□ 0
VPS33B-208ENST00000574755 SART1O43290 800 aaKnown RBP15.07■□□□□ 0
VPS33B-208ENST00000574755 PHACTR2O75167 634 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 TOM1L1O75674 476 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 CALCAP01258 141 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 SLC26A2P50443 739 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 GYS2P54840 703 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 MESDQ14696 234 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 MAPK6Q16659 721 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 CDCA2Q69YH5 1023 aaPredicted RBP15.07■□□□□ 0
VPS33B-208ENST00000574755 ZNF771Q7L3S4 317 aaPredicted RBP15.07■□□□□ 0
VPS33B-208ENST00000574755 FAM71BQ8TC56 605 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 TRAPPC12Q8WVT3 735 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 RNPC3Q96LT9 517 aaKnown RBP15.07■□□□□ 0
VPS33B-208ENST00000574755 CCDC113Q9H0I3 377 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 DDX47Q9H0S4 455 aaKnown RBP15.07■□□□□ 0
VPS33B-208ENST00000574755 NFU1Q9UMS0 254 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 CNTNAP2Q9UHC6 1331 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 PLXNA1Q9UIW2 1896 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 LOC102724159A0A0B4J2E5 919 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 IGKV6-21A0A0C4DH24 114 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 PRKCBP05771 671 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 AARSP49588 968 aaKnown RBP eCLIP15.07■□□□□ 04e-6■■■■■ 30.6
VPS33B-208ENST00000574755 PAK2Q13177 524 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 PWP2Q15269 919 aaKnown RBP15.07■□□□□ 0
VPS33B-208ENST00000574755 ACAD10Q6JQN1 1059 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 ARMCX2Q7L311 632 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 PNMA8AQ86V59 439 aaPredicted RBP15.07■□□□□ 0
VPS33B-208ENST00000574755 GPRC5AQ8NFJ5 357 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 OR5B17Q8NGF7 314 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 ZNF564Q8TBZ8 553 aaPredicted RBP15.07■□□□□ 0
VPS33B-208ENST00000574755 JPH2Q9BR39 696 aaPredicted RBP15.07■□□□□ 0
VPS33B-208ENST00000574755 NUP85Q9BW27 656 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 GTF3C4Q9UKN8 822 aa15.07■□□□□ 0
VPS33B-208ENST00000574755 TTC7AQ9ULT0 858 aaPredicted RBP15.07■□□□□ 0
VPS33B-208ENST00000574755 PCDHB2Q9Y5E7 798 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms