RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 NUMBLQ9Y6R0 609 aa23.24■■□□□ 1.31
VPS53-216ENST00000574029 STK25O00506 426 aa23.23■■□□□ 1.31
VPS53-216ENST00000574029 HOXA9P31269 272 aa23.23■■□□□ 1.31
VPS53-216ENST00000574029 LIN9Q5TKA1 542 aa23.23■■□□□ 1.31
VPS53-216ENST00000574029 PHLDB3Q6NSJ2 640 aa23.23■■□□□ 1.31
VPS53-216ENST00000574029 GRASPQ7Z6J2 395 aaPredicted RBP23.23■■□□□ 1.31
VPS53-216ENST00000574029 C8orf76Q96K31 380 aa23.23■■□□□ 1.31
VPS53-216ENST00000574029 TBC1D17Q9HA65 648 aa23.23■■□□□ 1.31
VPS53-216ENST00000574029 DOCK6Q96HP0 2047 aa23.23■■□□□ 1.31
VPS53-216ENST00000574029 TMEM189-UBE2V1I3L0A0 370 aa23.22■■□□□ 1.31
VPS53-216ENST00000574029 ADAM12O43184 909 aa23.22■■□□□ 1.31
VPS53-216ENST00000574029 EIF5BO60841 1220 aaKnown RBP23.22■■□□□ 1.31
VPS53-216ENST00000574029 C8AP07357 584 aa23.22■■□□□ 1.31
VPS53-216ENST00000574029 LIG1P18858 919 aa23.22■■□□□ 1.31
VPS53-216ENST00000574029 RBM25P49756 843 aaKnown RBP23.22■■□□□ 1.31
VPS53-216ENST00000574029 ECM1Q16610 540 aa23.22■■□□□ 1.31
VPS53-216ENST00000574029 DCAF4L1Q3SXM0 396 aa23.22■■□□□ 1.31
VPS53-216ENST00000574029 PPM1LQ5SGD2 360 aa23.22■■□□□ 1.31
VPS53-216ENST00000574029 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.22■■□□□ 1.31
VPS53-216ENST00000574029 GDAQ9Y2T3 454 aa23.22■■□□□ 1.31
VPS53-216ENST00000574029 CFAP54Q96N23 3096 aa23.22■■□□□ 1.31
VPS53-216ENST00000574029 MYH15Q9Y2K3 1946 aa23.21■■□□□ 1.31
VPS53-216ENST00000574029 RFX1P22670 979 aa23.21■■□□□ 1.31
VPS53-216ENST00000574029 EFNA5P52803 228 aa23.21■■□□□ 1.31
VPS53-216ENST00000574029 NT5DC1Q5TFE4 455 aa23.21■■□□□ 1.31
VPS53-216ENST00000574029 HAUS3Q68CZ6 603 aa23.21■■□□□ 1.31
VPS53-216ENST00000574029 PPP1R10Q96QC0 940 aaKnown RBP23.21■■□□□ 1.31
VPS53-216ENST00000574029 LLPHQ9BRT6 129 aaKnown RBP23.21■■□□□ 1.31
VPS53-216ENST00000574029 KIFC3Q9BVG8 833 aa23.21■■□□□ 1.31
VPS53-216ENST00000574029 ARHGEF3Q9NR81 526 aa23.21■■□□□ 1.31
VPS53-216ENST00000574029 CDH7Q9ULB5 785 aa23.21■■□□□ 1.31
VPS53-216ENST00000574029 POU2F2P09086 479 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 FGFR3P22607 806 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 FXR2P51116 673 aaKnown RBP eCLIP23.2■■□□□ 1.3
VPS53-216ENST00000574029 NTHL1P78549 312 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 RAB33AQ14088 237 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 TTC38Q5R3I4 469 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 ATF7IP2Q5U623 682 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 CCDC83Q8IWF9 413 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 ADSSL1Q8N142 457 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 C4orf32Q8N8J7 132 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 ST13P5Q8NFI4 369 aaPredicted RBP23.2■■□□□ 1.3
VPS53-216ENST00000574029 KIFAP3Q92845 792 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 FGF14Q92915 247 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 IFT74Q96LB3 600 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 RPP25Q9BUL9 199 aaKnown RBP23.2■■□□□ 1.3
VPS53-216ENST00000574029 BHMT2Q9H2M3 363 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 POLD4Q9HCU8 107 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 DLGAP2Q9P1A6 1054 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 MTRRQ9UBK8 725 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 LIMCH1Q9UPQ0 1083 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 TRIP11Q15643 1979 aa23.2■■□□□ 1.3
VPS53-216ENST00000574029 CCL16O15467 120 aa23.19■■□□□ 1.3
VPS53-216ENST00000574029 IGFBP6P24592 240 aaPredicted RBP23.19■■□□□ 1.3
VPS53-216ENST00000574029 CCT6AP40227 531 aaKnown RBP23.19■■□□□ 1.3
VPS53-216ENST00000574029 TRAPPC10P48553 1259 aa23.19■■□□□ 1.3
VPS53-216ENST00000574029 UVSSAQ2YD98 709 aa23.19■■□□□ 1.3
VPS53-216ENST00000574029 DCLRE1AQ6PJP8 1040 aa23.19■■□□□ 1.3
VPS53-216ENST00000574029 PARM1Q6UWI2 310 aa23.19■■□□□ 1.3
VPS53-216ENST00000574029 CD300LGQ6UXG3 332 aa23.19■■□□□ 1.3
VPS53-216ENST00000574029 FBXO18Q8NFZ0 1043 aa23.19■■□□□ 1.3
VPS53-216ENST00000574029 SIT1Q9Y3P8 196 aa23.19■■□□□ 1.3
VPS53-216ENST00000574029 XYLBO75191 536 aa23.18■■□□□ 1.3
VPS53-216ENST00000574029 B3GAT3O94766 335 aa23.18■■□□□ 1.3
VPS53-216ENST00000574029 OR1D2P34982 312 aa23.18■■□□□ 1.3
VPS53-216ENST00000574029 CLCNKBP51801 687 aa23.18■■□□□ 1.3
VPS53-216ENST00000574029 GLRA4Q5JXX5 417 aa23.18■■□□□ 1.3
VPS53-216ENST00000574029 AXDND1Q5T1B0 1012 aaPredicted RBP23.18■■□□□ 1.3
VPS53-216ENST00000574029 RTL10Q7L3V2 364 aa23.18■■□□□ 1.3
VPS53-216ENST00000574029 SLC7A14Q8TBB6 771 aa23.18■■□□□ 1.3
VPS53-216ENST00000574029 FGF13Q92913 245 aa23.18■■□□□ 1.3
VPS53-216ENST00000574029 UROC1Q96N76 676 aa23.18■■□□□ 1.3
VPS53-216ENST00000574029 TNFSF13BQ9Y275 285 aa23.18■■□□□ 1.3
VPS53-216ENST00000574029 NOTCH4Q99466 2003 aa23.18■■□□□ 1.3
VPS53-216ENST00000574029 K7ERI5 159 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 SEC24BO95487 1268 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 DCNP07585 359 aaKnown RBP23.17■■□□□ 1.3
VPS53-216ENST00000574029 STARD6P59095 220 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 GPC5P78333 572 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 UPP1Q16831 310 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 RSPO2Q6UXX9 243 aaPredicted RBP23.17■■□□□ 1.3
VPS53-216ENST00000574029 MTSS1LQ765P7 747 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 APBB1IPQ7Z5R6 666 aaPredicted RBP23.17■■□□□ 1.3
VPS53-216ENST00000574029 ITFG1Q8TB96 612 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 SEMA4AQ9H3S1 761 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 LRWD1Q9UFC0 647 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 POLIQ9UNA4 740 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 KIAA1024Q9UPX6 916 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 BACE2Q9Y5Z0 518 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 DMDP11532 3685 aa23.17■■□□□ 1.3
VPS53-216ENST00000574029 PDIA5Q14554 519 aa23.16■■□□□ 1.3
VPS53-216ENST00000574029 XKR4Q5GH76 650 aa23.16■■□□□ 1.3
VPS53-216ENST00000574029 SPECC1Q5M775 1068 aa23.16■■□□□ 1.3
VPS53-216ENST00000574029 DDX19AQ9NUU7 478 aaKnown RBP23.16■■□□□ 1.3
VPS53-216ENST00000574029 NOL7Q9UMY1 257 aaKnown RBP23.16■■□□□ 1.3
VPS53-216ENST00000574029 CDY1Q9Y6F8 540 aa23.16■■□□□ 1.3
VPS53-216ENST00000574029 SMIM28A0A1B0GU29 152 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 TKTP29401 623 aaKnown RBP23.15■■□□□ 1.3
VPS53-216ENST00000574029 GRM5P41594 1212 aa23.15■■□□□ 1.3
VPS53-216ENST00000574029 HMGN5P82970 282 aaKnown RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms