RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 SEPT8Q92599 483 aa10.59□□□□□ -0.71
CIITA-208ENST00000572665 APBB2Q92870 758 aa10.59□□□□□ -0.71
CIITA-208ENST00000572665 INPP4AQ96PE3 977 aaPredicted RBP10.59□□□□□ -0.71
CIITA-208ENST00000572665 CTAGE1Q96RT6 745 aa10.59□□□□□ -0.71
CIITA-208ENST00000572665 IL25Q9H293 177 aa10.59□□□□□ -0.71
CIITA-208ENST00000572665 PIDD1Q9HB75 910 aa10.59□□□□□ -0.71
CIITA-208ENST00000572665 RBM8AQ9Y5S9 174 aaKnown RBP10.59□□□□□ -0.71
CIITA-208ENST00000572665 MEIS3P2A8K0S8 358 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 MAFGO15525 162 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 GAS2O43903 313 aaKnown RBP10.58□□□□□ -0.72
CIITA-208ENST00000572665 SMIM10L2AP0DMW4 78 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 SMIM10L2BP0DMW5 78 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 SP2Q02086 613 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 GRB10Q13322 594 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 PTPROQ16827 1216 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 RSPH3Q86UC2 560 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 LSRQ86X29 649 aaPredicted RBP10.58□□□□□ -0.72
CIITA-208ENST00000572665 MB21D2Q8IYB1 491 aaPredicted RBP10.58□□□□□ -0.72
CIITA-208ENST00000572665 OR6P1Q8NGX9 317 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 ZNF507Q8TCN5 953 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 ISL2Q96A47 359 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 ACSF2Q96CM8 615 aaPredicted RBP10.58□□□□□ -0.72
CIITA-208ENST00000572665 MEGF10Q96KG7 1140 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 C1QTNF1Q9BXJ1 281 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 LY9Q9HBG7 655 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 SLC12A7Q9Y666 1083 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 NRCAMQ92823 1304 aa10.58□□□□□ -0.72
CIITA-208ENST00000572665 COL4A4P53420 1690 aaPredicted RBP10.57□□□□□ -0.72
CIITA-208ENST00000572665 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.57□□□□□ -0.72
CIITA-208ENST00000572665 RFXAPO00287 272 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 PRC1O43663 620 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 DNAJA2O60884 412 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 LIFRP42702 1097 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 CHRNA4P43681 627 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 ERVK-21P61565 698 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 DEFB103AP81534 67 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 MRPS9P82933 396 aaKnown RBP10.57□□□□□ -0.72
CIITA-208ENST00000572665 TRIM71Q2Q1W2 868 aaKnown RBP10.57□□□□□ -0.72
CIITA-208ENST00000572665 UVSSAQ2YD98 709 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 PLEKHG4Q58EX7 1191 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 TAF2Q6P1X5 1199 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 UBE3DQ7Z6J8 389 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 IL31RAQ8NI17 732 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 TMEM40Q8WWA1 233 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 PIBF1Q8WXW3 757 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 GPR20Q99678 358 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 RNPEPQ9H4A4 650 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 PSTPIP2Q9H939 334 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 FBRSQ9HAH7 460 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 RTEL1Q9NZ71 1219 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 GMIPQ9P107 970 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 TJP2Q9UDY2 1190 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 EYSQ5T1H1 3165 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 TCF20Q9UGU0 1960 aaKnown RBP10.57□□□□□ -0.72
CIITA-208ENST00000572665 DOCK5Q9H7D0 1870 aa10.57□□□□□ -0.72
CIITA-208ENST00000572665 PRRC2BQ5JSZ5 2229 aaKnown RBP10.56□□□□□ -0.72
CIITA-208ENST00000572665 RNGTTO60942 597 aaKnown RBP10.56□□□□□ -0.72
CIITA-208ENST00000572665 HOXC8P31273 242 aa10.56□□□□□ -0.72
CIITA-208ENST00000572665 ZNF200P98182 395 aaPredicted RBP10.56□□□□□ -0.72
CIITA-208ENST00000572665 GPNMBQ14956 572 aa10.56□□□□□ -0.72
CIITA-208ENST00000572665 HID1Q8IV36 788 aa10.56□□□□□ -0.72
CIITA-208ENST00000572665 SMYD4Q8IYR2 804 aaPredicted RBP10.56□□□□□ -0.72
CIITA-208ENST00000572665 MYOCDQ8IZQ8 938 aa10.56□□□□□ -0.72
CIITA-208ENST00000572665 FAM169BQ8N8A8 192 aa10.56□□□□□ -0.72
CIITA-208ENST00000572665 KCT2Q8NC54 265 aa10.56□□□□□ -0.72
CIITA-208ENST00000572665 DBF4BQ8NFT6 615 aa10.56□□□□□ -0.72
CIITA-208ENST00000572665 YME1L1Q96TA2 773 aa10.56□□□□□ -0.72
CIITA-208ENST00000572665 ACSS3Q9H6R3 686 aa10.56□□□□□ -0.72
CIITA-208ENST00000572665 ERAP1Q9NZ08 941 aa10.56□□□□□ -0.72
CIITA-208ENST00000572665 RWDD3Q9Y3V2 267 aa10.56□□□□□ -0.72
CIITA-208ENST00000572665 RALGAPA2Q2PPJ7 1873 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 LCHNA4D1U4 455 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 LINC01553A4QN01 128 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 SLC22A31A6NKX4 558 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 SH2B2O14492 632 aaPredicted RBP10.55□□□□□ -0.72
CIITA-208ENST00000572665 MEIS2O14770 477 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 RAB6AP20340 208 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 ANTXR2P58335 489 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 HTRA4P83105 476 aaPredicted RBP10.55□□□□□ -0.72
CIITA-208ENST00000572665 TFF2Q03403 129 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 MTMR1Q13613 665 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 UTP14CQ5TAP6 766 aaKnown RBP10.55□□□□□ -0.72
CIITA-208ENST00000572665 OVOS1Q6IE37 1185 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 USP17L6PQ6QN14 398 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 FAM43BQ6ZT52 329 aaPredicted RBP10.55□□□□□ -0.72
CIITA-208ENST00000572665 CD163Q86VB7 1156 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 SEPT1Q8WYJ6 367 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 TOP1MTQ969P6 601 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 GLT8D2Q9H1C3 349 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 SMARCAD1Q9H4L7 1026 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 SETD4Q9NVD3 440 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 RBM28Q9NW13 759 aaKnown RBP10.55□□□□□ -0.72
CIITA-208ENST00000572665 PRKAG3Q9UGI9 489 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 KLHL3Q9UH77 587 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 MTUS1Q9ULD2 1270 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 PRUNE2Q8WUY3 3088 aa10.55□□□□□ -0.72
CIITA-208ENST00000572665 EPOPA6NHQ4 379 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 RRN3P2A6NIE6 340 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 hCG_1984214I3L0E3 225 aa10.54□□□□□ -0.72
CIITA-208ENST00000572665 M0QZ92 97 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms