RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 NOTUMQ6P988 496 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 Q6ZS52 159 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 MICU3Q86XE3 530 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 FAM200AQ8TCP9 573 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 HASPINQ8TF76 798 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 CRYGNQ8WXF5 182 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 CCDC51Q96ER9 411 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 CEP89Q96ST8 783 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 TEKT3Q9BXF9 490 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 EIF2AQ9BY44 585 aaKnown RBP14.57□□□□□ -0.08
CCDC40-208ENST00000572270 RNF39Q9H2S5 420 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 AVENQ9NQS1 362 aaPredicted RBP14.57□□□□□ -0.08
CCDC40-208ENST00000572270 BARHL2Q9NY43 387 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 NEUROG3Q9Y4Z2 214 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 HES2Q9Y543 173 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 SDK1Q7Z5N4 2213 aa14.57□□□□□ -0.08
CCDC40-208ENST00000572270 LRG1P02750 347 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 PTPN2P17706 415 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 AXLP30530 894 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 MCM5P33992 734 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 MLLT6P55198 1093 aaPredicted RBP14.56□□□□□ -0.08
CCDC40-208ENST00000572270 PTH1RQ03431 593 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 ELAVL2Q12926 359 aaKnown RBP14.56□□□□□ -0.08
CCDC40-208ENST00000572270 RAB33AQ14088 237 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 FAM78AQ5JUQ0 283 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 LRCH2Q5VUJ6 765 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 TCEAL6Q6IPX3 200 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 VITQ6UXI7 678 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 SYNE3Q6ZMZ3 975 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 MIER3Q7Z3K6 550 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 PLEKHM2Q8IWE5 1019 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 RDM1Q8NG50 284 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 PSPC1Q8WXF1 523 aaKnown RBP14.56□□□□□ -0.08
CCDC40-208ENST00000572270 SLC7A3Q8WY07 619 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 TCEAL3Q969E4 200 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 ASB16Q96NS5 453 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 UNC45AQ9H3U1 944 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 MINDY3Q9H8M7 445 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 FLNBO75369 2602 aaKnown RBP14.56□□□□□ -0.08
CCDC40-208ENST00000572270 ITPR1Q14643 2758 aa14.56□□□□□ -0.08
CCDC40-208ENST00000572270 SMG1Q96Q15 3661 aaKnown RBP14.55□□□□□ -0.08
CCDC40-208ENST00000572270 DDX11L8A8MPP1 907 aa14.55□□□□□ -0.08
CCDC40-208ENST00000572270 ZNF197O14709 1029 aa14.55□□□□□ -0.08
CCDC40-208ENST00000572270 ADAM12O43184 909 aa14.55□□□□□ -0.08
CCDC40-208ENST00000572270 OR1D2P34982 312 aa14.55□□□□□ -0.08
CCDC40-208ENST00000572270 LIFRP42702 1097 aa14.55□□□□□ -0.08
CCDC40-208ENST00000572270 KPNA1P52294 538 aaPredicted RBP14.55□□□□□ -0.08
CCDC40-208ENST00000572270 KIAA1211LQ6NV74 962 aa14.55□□□□□ -0.08
CCDC40-208ENST00000572270 RUFY2Q8WXA3 655 aa14.55□□□□□ -0.08
CCDC40-208ENST00000572270 RIT2Q99578 217 aa14.55□□□□□ -0.08
CCDC40-208ENST00000572270 C8orf33Q9H7E9 229 aaPredicted RBP14.55□□□□□ -0.08
CCDC40-208ENST00000572270 RBM28Q9NW13 759 aaKnown RBP14.55□□□□□ -0.08
CCDC40-208ENST00000572270 AKAP3O75969 853 aa14.54□□□□□ -0.08
CCDC40-208ENST00000572270 CSRP1P21291 193 aaKnown RBP14.54□□□□□ -0.08
CCDC40-208ENST00000572270 CIITAP33076 1130 aa14.54□□□□□ -0.08
CCDC40-208ENST00000572270 HDAC1Q13547 482 aaPredicted RBP14.54□□□□□ -0.08
CCDC40-208ENST00000572270 PCBP1Q15365 356 aaKnown RBP eCLIP14.54□□□□□ -0.08
CCDC40-208ENST00000572270 PDZD3Q86UT5 571 aa14.54□□□□□ -0.08
CCDC40-208ENST00000572270 YAF2Q8IY57 180 aa14.54□□□□□ -0.08
CCDC40-208ENST00000572270 EXOC8Q8IYI6 725 aa14.54□□□□□ -0.08
CCDC40-208ENST00000572270 REXO1Q8N1G1 1221 aaKnown RBP14.54□□□□□ -0.08
CCDC40-208ENST00000572270 SMARCD2Q92925 531 aa14.54□□□□□ -0.08
CCDC40-208ENST00000572270 CPB2Q96IY4 423 aa14.54□□□□□ -0.08
CCDC40-208ENST00000572270 CORO1BQ9BR76 489 aa14.54□□□□□ -0.08
CCDC40-208ENST00000572270 CSRNP2Q9H175 543 aa14.54□□□□□ -0.08
CCDC40-208ENST00000572270 NXF3Q9H4D5 531 aaKnown RBP14.54□□□□□ -0.08
CCDC40-208ENST00000572270 CACNG4Q9UBN1 327 aa14.54□□□□□ -0.08
CCDC40-208ENST00000572270 MSRB2Q9Y3D2 182 aa14.54□□□□□ -0.08
CCDC40-208ENST00000572270 ZMYM2Q9UBW7 1377 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 CCDC163A0A0D9SF12 145 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 WDR27A2RRH5 827 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 CASTOR2A6NHX0 329 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 SLC38A8A6NNN8 435 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 MSH4O15457 936 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 HYAL3O43820 417 aaPredicted RBP14.53□□□□□ -0.08
CCDC40-208ENST00000572270 KIF4AO95239 1232 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 AKAP5P24588 427 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 LAMTOR4Q0VGL1 99 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 TUSC3Q13454 348 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 ELF2Q15723 593 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 PRSS36Q5K4E3 855 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 PLA2G4FQ68DD2 849 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 B4GALNT3Q6L9W6 998 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 C19orf48Q6RUI8 117 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 POTEHQ6S545 545 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 PDZD4Q76G19 769 aaPredicted RBP14.53□□□□□ -0.08
CCDC40-208ENST00000572270 RNF149Q8NC42 400 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 EXOC6Q8TAG9 804 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 PRPF31Q8WWY3 499 aaKnown RBP14.53□□□□□ -0.08
CCDC40-208ENST00000572270 LENG9Q96B70 501 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 ZC3H10Q96K80 434 aaKnown RBP14.53□□□□□ -0.08
CCDC40-208ENST00000572270 PAAF1Q9BRP4 392 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 TMEM9BQ9NQ34 198 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 C2orf42Q9NWW7 574 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 PARP2Q9UGN5 583 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 V9GY48 417 aaPredicted RBP14.53□□□□□ -0.08
CCDC40-208ENST00000572270 VWA8A3KMH1 1905 aa14.53□□□□□ -0.08
CCDC40-208ENST00000572270 TSPAN1O60635 241 aa14.52□□□□□ -0.09
CCDC40-208ENST00000572270 MICAL2O94851 1124 aa14.52□□□□□ -0.09
CCDC40-208ENST00000572270 STBD1O95210 358 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms