RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 GOLGA8IPA6NC78 632 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 GOLGA8JA6NMD2 632 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 CDH16O75309 829 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 ENTPD3O75355 529 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 SLC1A1P43005 524 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 SLC8A3P57103 927 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 SIX1Q15475 284 aaPredicted RBP11.49□□□□□ -0.57
CCDC40-207ENST00000572253 KYNUQ16719 465 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 UBAP2Q5T6F2 1119 aaKnown RBP11.49□□□□□ -0.57
CCDC40-207ENST00000572253 ATL2Q8NHH9 583 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 RAB3IPQ96QF0 476 aaPredicted RBP11.49□□□□□ -0.57
CCDC40-207ENST00000572253 MXRA8Q9BRK3 442 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 TIPINQ9BVW5 301 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 RXFP1Q9HBX9 757 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 GGT7Q9UJ14 662 aa11.49□□□□□ -0.57
CCDC40-207ENST00000572253 TISP43B9A030 160 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 OAS1P00973 400 aaKnown RBP11.48□□□□□ -0.57
CCDC40-207ENST00000572253 STAT4Q14765 748 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 TRIP13Q15645 432 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-207ENST00000572253 STRIP1Q5VSL9 837 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 STAMBPL1Q96FJ0 436 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 KREMEN1Q96MU8 473 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 CSRNP1Q96S65 589 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.48□□□□□ -0.57
CCDC40-207ENST00000572253 MLXIPLQ9NP71 852 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 BATF3Q9NR55 127 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 AGAP1Q9UPQ3 857 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 SPATA31A6Q5VVP1 1343 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 QSER1Q2KHR3 1735 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 CENPCQ03188 943 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 BNIP1Q12981 228 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 CCDC89Q8N998 374 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 NSMCE1Q8WV22 266 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 MIEF2Q96C03 454 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 MAGEB18Q96M61 343 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 POP1Q99575 1024 aaKnown RBP11.48□□□□□ -0.57
CCDC40-207ENST00000572253 LRRC4BQ9NT99 713 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 DNAJC17Q9NVM6 304 aaKnown RBP11.48□□□□□ -0.57
CCDC40-207ENST00000572253 STK38LQ9Y2H1 464 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 USP20Q9Y2K6 914 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 SORBS3O60504 671 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 POTEJP0CG39 1038 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 VPS41P49754 854 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 ALDH5A1P51649 535 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-207ENST00000572253 FKBP1AP62942 108 aaKnown RBP11.48□□□□□ -0.57
CCDC40-207ENST00000572253 KCNJ2P63252 427 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 VSTM1Q6UX27 236 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 TMEM174Q8WUU8 243 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 PSPC1Q8WXF1 523 aaKnown RBP11.48□□□□□ -0.57
CCDC40-207ENST00000572253 MOV10L1Q9BXT6 1211 aaKnown RBP11.48□□□□□ -0.57
CCDC40-207ENST00000572253 TMEM8AQ9HCN3 771 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 TXLNGQ9NUQ3 528 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 ZBTB21Q9ULJ3 1066 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 C15orf41Q9Y2V0 281 aa11.48□□□□□ -0.57
CCDC40-207ENST00000572253 SLC16A4O15374 487 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 TCEA3O75764 348 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 GJB6O95452 261 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 ANP32DO95626 131 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 MYBL1P10243 752 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 CHKAP35790 457 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 QARSP47897 775 aaKnown RBP11.47□□□□□ -0.57
CCDC40-207ENST00000572253 PEX3P56589 373 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 SNRNP35Q16560 246 aaKnown RBP11.47□□□□□ -0.57
CCDC40-207ENST00000572253 FAM160B2Q86V87 743 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 SRRM1Q8IYB3 904 aaKnown RBP11.47□□□□□ -0.57
CCDC40-207ENST00000572253 FBXL13Q8NEE6 735 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 DCLK3Q9C098 648 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 EBF2Q9HAK2 575 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 SERPINA10Q9UK55 444 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 USP21Q9UK80 565 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 MYH11P35749 1972 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 KDM4FA0A1W2PPD8 638 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 NR1H3Q13133 447 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 AOC3Q16853 763 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 ENOSF1Q7L5Y1 443 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 PAIP2Q9BPZ3 127 aaKnown RBP11.47□□□□□ -0.57
CCDC40-207ENST00000572253 PITPNM3Q9BZ71 974 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 NINJ2Q9NZG7 142 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 TBK1Q9UHD2 729 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 PCDHAC2Q9Y5I4 1007 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 GTF2BQ00403 316 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 CLEC16AQ2KHT3 1053 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 GALNTL6Q49A17 601 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 LIN9Q5TKA1 542 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 CC2D2BQ6DHV5 1058 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 TLDC1Q6P9B6 456 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 RHBDF2Q6PJF5 856 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 GSTA5Q7RTV2 222 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 CPNE8Q86YQ8 564 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 RIBC1Q8N443 379 aaPredicted RBP11.47□□□□□ -0.57
CCDC40-207ENST00000572253 AGAP11Q8TF27 550 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 ATG4AQ8WYN0 398 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 FOXP3Q9BZS1 431 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 AAASQ9NRG9 546 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 CHST7Q9NS84 486 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 HERC5Q9UII4 1024 aaKnown RBP11.47□□□□□ -0.57
CCDC40-207ENST00000572253 ACTL7BQ9Y614 415 aa11.47□□□□□ -0.57
CCDC40-207ENST00000572253 TAF1LQ8IZX4 1826 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 SCP2P22307 547 aa11.46□□□□□ -0.57
CCDC40-207ENST00000572253 ALDH3A1P30838 453 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms