RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TAF4BQ92750 862 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 ERO1AQ96HE7 468 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 ADPGKQ9BRR6 497 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 GCOM2Q9BZD3 368 aaPredicted RBP8.63□□□□□ -1.03
VPS39-213ENST00000570062 INTS2Q9H0H0 1204 aaKnown RBP8.63□□□□□ -1.03
VPS39-213ENST00000570062 PCIF1Q9H4Z3 704 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 FAM124BQ9H5Z6 455 aaPredicted RBP8.63□□□□□ -1.03
VPS39-213ENST00000570062 SAGE1Q9NXZ1 904 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 TNFSF13BQ9Y275 285 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 FCF1Q9Y324 198 aaKnown RBP8.63□□□□□ -1.03
VPS39-213ENST00000570062 TRPM7Q96QT4 1865 aa8.63□□□□□ -1.03
VPS39-213ENST00000570062 LRRC53A6NM62 1247 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 ANKRD63C9JTQ0 380 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 INO80B-WBP1J3KQ70 363 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 SEPT4O43236 478 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 MCF2P10911 925 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 LBX1P52954 281 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 KLHL30Q0D2K2 578 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 BMS1Q14692 1282 aaKnown RBP8.62□□□□□ -1.03
VPS39-213ENST00000570062 FSCN1Q16658 493 aaKnown RBP8.62□□□□□ -1.03
VPS39-213ENST00000570062 ATF7IP2Q5U623 682 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 CYP4F22Q6NT55 531 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 NFRKBQ6P4R8 1299 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 KIAA1328Q86T90 577 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 WDR49Q8IV35 697 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 KSR1Q8IVT5 923 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 RNF10Q8N5U6 811 aaKnown RBP8.62□□□□□ -1.03
VPS39-213ENST00000570062 LINC01465Q8N7H1 131 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 PCSK9Q8NBP7 692 aaKnown RBP8.62□□□□□ -1.03
VPS39-213ENST00000570062 THAP11Q96EK4 314 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 NT5C1BQ96P26 610 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 ACO2Q99798 780 aaKnown RBP8.62□□□□□ -1.03
VPS39-213ENST00000570062 FAM213AQ9BRX8 229 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 CRACR2AQ9BSW2 395 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 MTG1Q9BT17 334 aaPredicted RBP8.62□□□□□ -1.03
VPS39-213ENST00000570062 IMPG2Q9BZV3 1241 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 DNAI2Q9GZS0 605 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 CCDC113Q9H0I3 377 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 GANQ9H2C0 597 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 RAB20Q9NX57 234 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 TRMT1Q9NXH9 659 aaKnown RBP8.62□□□□□ -1.03
VPS39-213ENST00000570062 RBAKQ9NYW8 714 aaPredicted RBP8.62□□□□□ -1.03
VPS39-213ENST00000570062 INTUQ9ULD6 942 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 AKT3Q9Y243 479 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 R3HCC1Q9Y3T6 440 aaKnown RBP8.62□□□□□ -1.03
VPS39-213ENST00000570062 TELO2Q9Y4R8 837 aa8.62□□□□□ -1.03
VPS39-213ENST00000570062 ADGRA3Q8IWK6 1321 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.61□□□□□ -1.03
VPS39-213ENST00000570062 MBLAC1A4D2B0 266 aaPredicted RBP8.61□□□□□ -1.03
VPS39-213ENST00000570062 SOWAHDA6NJG2 315 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 RBAK-RBAKDNI3L0D1 243 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 M0QZ92 97 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 HAS3O00219 553 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 NOL4O94818 638 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 ERLIN2O94905 339 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 CLTAP09496 248 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 TNNI1P19237 187 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 SLC9A1P19634 815 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 PROZP22891 400 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 TBXAS1P24557 533 aaPredicted RBP8.61□□□□□ -1.03
VPS39-213ENST00000570062 CYP2C19P33261 490 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 SOX5P35711 763 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 FLT3LGP49771 235 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 GCNT1Q02742 428 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 PTPN11Q06124 597 aaPredicted RBP8.61□□□□□ -1.03
VPS39-213ENST00000570062 RAPGEF1Q13905 1077 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 SLC18A3Q16572 532 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 DUOXA2Q1HG44 320 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 KIAA0753Q2KHM9 967 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 DCAF4L1Q3SXM0 396 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 EPC2Q52LR7 807 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 TDRD12Q587J7 1177 aaKnown RBP8.61□□□□□ -1.03
VPS39-213ENST00000570062 WDR59Q6PJI9 974 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 RAD9BQ6WBX8 426 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 TAS1R3Q7RTX0 852 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 TRIM50Q86XT4 487 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 BRSK2Q8IWQ3 736 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 REXO1L1PQ8IX06 675 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 LRRC71Q8N4P6 559 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 TTC39CQ8N584 583 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 C7orf31Q8N865 590 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 LMBR1Q8WVP7 490 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 NLRP7Q8WX94 980 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 C16orf45Q96MC5 204 aaPredicted RBP8.61□□□□□ -1.03
VPS39-213ENST00000570062 NLRP4Q96MN2 994 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 SCLT1Q96NL6 688 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 KIFC3Q9BVG8 833 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 TARS2Q9BW92 718 aaKnown RBP8.61□□□□□ -1.03
VPS39-213ENST00000570062 TMEM117Q9H0C3 514 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 UPF3AQ9H1J1 476 aaKnown RBP8.61□□□□□ -1.03
VPS39-213ENST00000570062 ASB7Q9H672 318 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 PLEKHA5Q9HAU0 1116 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 NLRC4Q9NPP4 1024 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 DNAJC12Q9UKB3 198 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 SLC27A5Q9Y2P5 690 aa8.61□□□□□ -1.03
VPS39-213ENST00000570062 CNTNAP2Q9UHC6 1331 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 C17orf102A2RUQ5 167 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 BTNL10A8MVZ5 291 aa8.6□□□□□ -1.03
VPS39-213ENST00000570062 RNF225M0QZC1 329 aaPredicted RBP8.6□□□□□ -1.03
VPS39-213ENST00000570062 B4GALT4O60513 344 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms