RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 JDP2Q8WYK2 163 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 WDR11Q9BZH6 1224 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 CYP4F11Q9HBI6 524 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.11□□□□□ -0.47
CLN3-238ENST00000569430 ATRNO75882 1429 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 A0A0A6YYK5 440 aaPredicted RBP12.11□□□□□ -0.47
CLN3-238ENST00000569430 MGRN1O60291 552 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 ENTPD5O75356 428 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 MMP13P45452 471 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 ASTE1Q2TB18 679 aaPredicted RBP12.11□□□□□ -0.47
CLN3-238ENST00000569430 TAF1BQ53T94 588 aaPredicted RBP12.11□□□□□ -0.47
CLN3-238ENST00000569430 NLRP9Q7RTR0 991 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 CYP2W1Q8TAV3 490 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 VTI1AQ96AJ9 217 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 CFAP36Q96G28 342 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 MRPL47Q9HD33 250 aaKnown RBP12.11□□□□□ -0.47
CLN3-238ENST00000569430 SLC4A7Q9Y6M7 1214 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 KIF3CO14782 793 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 ZBTB39O15060 712 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 TLR3O15455 904 aaKnown RBP12.11□□□□□ -0.47
CLN3-238ENST00000569430 PPIP5K2O43314 1243 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 NPEPPSP55786 919 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 NR1H3Q13133 447 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 RINT1Q6NUQ1 792 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 LNX1Q8TBB1 728 aaPredicted RBP12.11□□□□□ -0.47
CLN3-238ENST00000569430 CENPTQ96BT3 561 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 LXNQ9BS40 222 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 MYLK2Q9H1R3 596 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 IFT122Q9HBG6 1241 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 SLCO1B3Q9NPD5 702 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 AGPAT3Q9NRZ7 376 aa12.11□□□□□ -0.47
CLN3-238ENST00000569430 CNOT7Q9UIV1 285 aaKnown RBP12.11□□□□□ -0.47
CLN3-238ENST00000569430 RBAK-RBAKDNI3L0D1 243 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 CCDC22O60826 627 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 PIAS1O75925 651 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 SNUPNO95149 360 aaKnown RBP12.1□□□□□ -0.47
CLN3-238ENST00000569430 ZWINTO95229 277 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 RFC5P40937 340 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 GRAPQ13588 217 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 THOC5Q13769 683 aaKnown RBP12.1□□□□□ -0.47
CLN3-238ENST00000569430 TMEM119Q4V9L6 283 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 LACTB2Q53H82 288 aaPredicted RBP12.1□□□□□ -0.47
CLN3-238ENST00000569430 TMEM270Q6UE05 265 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 CYFIP1Q7L576 1253 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 TEX9Q8N6V9 391 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 GRAPLQ8TC17 118 aaPredicted RBP12.1□□□□□ -0.47
CLN3-238ENST00000569430 PI4K2AQ9BTU6 479 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 KMT5AQ9NQR1 393 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 AGAP1Q9UPQ3 857 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 LGR5O75473 907 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 KRT4P19013 534 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 BPIFB4P59827 614 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 CUL3Q13618 768 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 DNAJC24Q6P3W2 148 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 C6orf89Q6UWU4 347 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 ZNF572Q7Z3I7 529 aaPredicted RBP12.1□□□□□ -0.47
CLN3-238ENST00000569430 SPATA24Q86W54 205 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 RFX6Q8HWS3 928 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 ST13P4Q8IZP2 240 aaPredicted RBP12.1□□□□□ -0.47
CLN3-238ENST00000569430 HAS1Q92839 578 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 ACSF2Q96CM8 615 aaPredicted RBP12.1□□□□□ -0.47
CLN3-238ENST00000569430 MAGEB18Q96M61 343 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 TUBB6Q9BUF5 446 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 NDE1Q9NXR1 346 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 HEY2Q9UBP5 337 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 B2RBV5 119 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 LPXNO60711 386 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 GH2P01242 217 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 NCF2P19878 526 aaPredicted RBP12.1□□□□□ -0.47
CLN3-238ENST00000569430 GRIK5Q16478 980 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 CBWD6Q4V339 395 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 CBWD3Q5JTY5 395 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 CBWD5Q5RIA9 395 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 PPP1R18Q6NYC8 613 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 INTS5Q6P9B9 1019 aaKnown RBP12.1□□□□□ -0.47
CLN3-238ENST00000569430 RHPN2Q8IUC4 686 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 PPM1NQ8N819 430 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 DDX27Q96GQ7 796 aaKnown RBP12.1□□□□□ -0.47
CLN3-238ENST00000569430 HES6Q96HZ4 224 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 THTPAQ9BU02 230 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 OSBPL8Q9BZF1 889 aa12.1□□□□□ -0.47
CLN3-238ENST00000569430 O00370 1275 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 COPEO14579 308 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 RGS9BPQ6ZS82 235 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 SLC26A7Q8TE54 656 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 KAT5Q92993 513 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 CENPKQ9BS16 269 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 DBNDD1Q9H9R9 158 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 LRRIQ4A6NIV6 560 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 SPECC1L-ADORA2AF8WAN1 911 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 TJP3O95049 919 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 VHLP40337 213 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 PSMC4P43686 418 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 NT5C2P49902 561 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 PRELPP51888 382 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 TMED1Q13445 227 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 HAUS6Q7Z4H7 955 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 RHOT1Q8IXI2 618 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 FITM2Q8N6M3 262 aa12.09□□□□□ -0.47
CLN3-238ENST00000569430 SPIRE2Q8WWL2 714 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms