RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 LIG3P49916 1009 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 NIPA1Q7RTP0 329 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 FAM71AQ8IYT1 594 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 ZDHHC14Q8IZN3 488 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 ATP6V0A1Q93050 837 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 IFT74Q96LB3 600 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 CARD9Q9H257 536 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 SLC9A2Q9UBY0 812 aa9.39□□□□□ -0.91
LINC00558-201ENST00000569422 MYO1FO00160 1098 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 CLDN3O15551 220 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 SHBGP04278 402 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 LSP1P33241 339 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 WNT7BP56706 349 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 MAGOHP61326 146 aaKnown RBP9.38□□□□□ -0.91
LINC00558-201ENST00000569422 SP2Q02086 613 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 CCDC137Q6PK04 289 aaKnown RBP9.38□□□□□ -0.91
LINC00558-201ENST00000569422 TMC3Q7Z5M5 1100 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 RPAINQ86UA6 219 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 MAP4K3Q8IVH8 894 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 ANKRD35Q8N283 1001 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 HELQQ8TDG4 1101 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 CEP89Q96ST8 783 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 HEMGNQ9BXL5 484 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 RASSF4Q9H2L5 321 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 TMEM8AQ9HCN3 771 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 A1CFQ9NQ94 594 aaKnown RBP9.38□□□□□ -0.91
LINC00558-201ENST00000569422 XPNPEP1Q9NQW7 623 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 ANAPC7Q9UJX3 599 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 NOCTQ9UK39 431 aaKnown RBP9.38□□□□□ -0.91
LINC00558-201ENST00000569422 TPX2Q9ULW0 747 aaKnown RBP9.38□□□□□ -0.91
LINC00558-201ENST00000569422 USTQ9Y2C2 406 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 SMAPO00193 183 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 SHOX2O60902 331 aaPredicted RBP9.38□□□□□ -0.91
LINC00558-201ENST00000569422 RPS6KA5O75582 802 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 GJB6O95452 261 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 PSAPP07602 524 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 FGFR4P22455 802 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 MARK3P27448 753 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 NLRP11P59045 1033 aaKnown RBP9.38□□□□□ -0.91
LINC00558-201ENST00000569422 PTENP60484 403 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 MAP3K10Q02779 954 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 CYP24A1Q07973 514 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 ZBTB41Q5SVQ8 909 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 SCARA3Q6AZY7 606 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 TTC27Q6P3X3 843 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 SCYL3Q8IZE3 742 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 GPD1LQ8N335 351 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 MICALL1Q8N3F8 863 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 PRELID2Q8N945 189 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 MDM1Q8TC05 714 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 NAP1L3Q99457 506 aaPredicted RBP9.38□□□□□ -0.91
LINC00558-201ENST00000569422 ARPC5LQ9BPX5 153 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 ZSWIM1Q9BR11 485 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 ERP44Q9BS26 406 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 RAB17Q9H0T7 212 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 TMBIM4Q9HC24 238 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 CYP26B1Q9NR63 512 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 ANKEF1Q9NU02 776 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 RGS17Q9UGC6 210 aaPredicted RBP9.38□□□□□ -0.91
LINC00558-201ENST00000569422 ERLIN2O94905 339 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 CFHP08603 1231 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 MAPTP10636 758 aaKnown RBP9.38□□□□□ -0.91
LINC00558-201ENST00000569422 KCNA2P16389 499 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 ZNF394Q53GI3 561 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 FMNL3Q8IVF7 1028 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 CCDC50Q8IVM0 306 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 ATG4AQ8WYN0 398 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 SHC3Q92529 594 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 TCHPQ9BT92 498 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 FAM114A2Q9NRY5 505 aa9.38□□□□□ -0.91
LINC00558-201ENST00000569422 TULP2O00295 520 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 LYPLA2O95372 231 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 RFX1P22670 979 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 PAX7P23759 505 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 MAPK4P31152 587 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 PIK3CAP42336 1068 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 STRN3Q13033 797 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 PPP1R7Q15435 360 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 RNF187Q5TA31 235 aaPredicted RBP9.37□□□□□ -0.91
LINC00558-201ENST00000569422 DCAF15Q66K64 600 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 CHADLQ6NUI6 762 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 ZBTB33Q86T24 672 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 MREGQ8N565 214 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 TRPM4Q8TD43 1214 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 ATP8B4Q8TF62 1192 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 ZNF516Q92618 1163 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 KIFAP3Q92845 792 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 PAGR1Q9BTK6 254 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 TARS2Q9BW92 718 aaKnown RBP9.37□□□□□ -0.91
LINC00558-201ENST00000569422 ATP6V0A4Q9HBG4 840 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 C1orf112Q9NSG2 853 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 CYP39A1Q9NYL5 469 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 GGA3Q9NZ52 723 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 ZNF214Q9UL59 606 aaPredicted RBP9.37□□□□□ -0.91
LINC00558-201ENST00000569422 FAM169AQ9Y6X4 670 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 MYH11P35749 1972 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 CFAP69A5D8W1 941 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 HMGB1P1B2RPK0 211 aaPredicted RBP9.37□□□□□ -0.91
LINC00558-201ENST00000569422 P4HA2O15460 535 aa9.37□□□□□ -0.91
LINC00558-201ENST00000569422 ATP2C2O75185 946 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms