RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 SPATS1Q496A3 300 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 CCDC152Q4G0S7 254 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 CCDC92Q53HC0 331 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 COBLL1Q53SF7 1204 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 ZMAT1Q5H9K5 638 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 WLSQ5T9L3 541 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 ANKRD45Q5TZF3 282 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 ARMC3Q5W041 872 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 SLFN13Q68D06 897 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 GRAMD4Q6IC98 578 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 FBXO38Q6PIJ6 1188 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 OLFML1Q6UWY5 402 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 CXXC5Q7LFL8 322 aaKnown RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 ARHGAP22Q7Z5H3 698 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 NOP9Q86U38 636 aaKnown RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 SPATS2Q86XZ4 545 aaKnown RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 WDR63Q8IWG1 891 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 PEX5LQ8IYB4 626 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 AFAP1Q8N556 730 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 PDILTQ8N807 584 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 SMYD1Q8NB12 490 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 OR8K1Q8NGG5 319 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 CTCFLQ8NI51 663 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 SMARCE1Q969G3 411 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 SLC35B4Q969S0 331 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 DHTKD1Q96HY7 919 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 MPP4Q96JB8 637 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 C8orf49Q96NF6 230 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 GNRHR2Q96P88 292 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 TUBGCP5Q96RT8 1024 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 CDC5LQ99459 802 aaKnown RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 GPR20Q99678 358 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 SH3GL1Q99961 368 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 SLC39A3Q9BRY0 314 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 PAGR1Q9BTK6 254 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 KRTAP17-1Q9BYP8 105 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 INO80BQ9C086 356 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 LRRC27Q9C0I9 530 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 RPAP3Q9H6T3 665 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.63□□□□□ -1.83
VPS35-208ENST00000568612 ACSS2Q9NR19 701 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 INTS7Q9NVH2 962 aaKnown RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 THG1LQ9NWX6 298 aaKnown RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 MKS1Q9NXB0 559 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 RGL1Q9NZL6 768 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 H2AFY2Q9P0M6 372 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 C6orf203Q9P0P8 240 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 Q9UFV3 132 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 MYO6Q9UM54 1294 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 NR2E1Q9Y466 385 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 IKBKGQ9Y6K9 419 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 SLC4A7Q9Y6M7 1214 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 PRDM15P57071 1507 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 KDM5BQ9UGL1 1544 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 ATXN2Q99700 1313 aaKnown RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 MAPK8IP3Q9UPT6 1336 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 MTUS2Q5JR59 1369 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 ANKRD36BQ8N2N9 1353 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 MAP3K5Q99683 1374 aa3.63□□□□□ -1.83
VPS35-208ENST00000568612 RPAP1Q9BWH6 1393 aaPredicted RBP3.63□□□□□ -1.83
VPS35-208ENST00000568612 KIF21BO75037 1637 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 ATP10AO60312 1499 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 GOLGA6L19H0YKK7 550 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 CDC14BO60729 498 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 ZNF189O75820 626 aaPredicted RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 CNOT4O95628 575 aaKnown RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 CYP17A1P05093 508 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 RPSAP08865 295 aaKnown RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 MYCLP1P12525 358 aaPredicted RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 H2AFXP16104 143 aaPredicted RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 IL4RP24394 825 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 HNRNPH1P31943 449 aaKnown RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 MAGEA10P43363 369 aaPredicted RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 RANBP1P43487 201 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 GCLCP48506 637 aaPredicted RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 FNTBP49356 437 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 RAC3P60763 192 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 EIF4A2Q14240 407 aaKnown RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 PCOLCEQ15113 449 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 PCBP1Q15365 356 aaKnown RBP eCLIP3.62□□□□□ -1.83
VPS35-208ENST00000568612 STILQ15468 1287 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 ZSCAN23Q3MJ62 389 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 TTC38Q5R3I4 469 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 ISM2Q6H9L7 571 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 SLFN12LQ6IEE8 588 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 ZNF585AQ6P3V2 769 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 GIMAP6Q6P9H5 292 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 SEPT14Q6ZU15 432 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 ARMC9Q7Z3E5 817 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 RSPH3Q86UC2 560 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 RTN4RL1Q86UN2 441 aaPredicted RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 ARHGEF25Q86VW2 580 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 IQCA1Q86XH1 822 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 PASD1Q8IV76 773 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 RNF168Q8IYW5 571 aaPredicted RBP3.62□□□□□ -1.83
VPS35-208ENST00000568612 C7orf31Q8N865 590 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 BICD2Q8TD16 824 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 CHTF18Q8WVB6 975 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 ARHGAP45Q92619 1136 aa3.62□□□□□ -1.83
VPS35-208ENST00000568612 KAT2BQ92831 832 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms