RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 TANC1Q9C0D5 1861 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 SMTNL1A8MU46 457 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 MAPK13O15264 365 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 SLC16A3O15427 465 aaKnown RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 MEFVO15553 781 aaPredicted RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 BAIAP3O94812 1187 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 FGFR1OPO95684 399 aaKnown RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 CLTAP09496 248 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 STAG3L1P0CL83 205 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 ATF7P17544 494 aaPredicted RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 PSMC2P35998 433 aaKnown RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 OSTNP61366 133 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 POU5F1Q01860 360 aaKnown RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 HSP90AA2PQ14568 343 aaPredicted RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 ENOX2Q16206 610 aaKnown RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 SNRNP35Q16560 246 aaKnown RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 KYAT1Q16773 422 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 TPD52L1Q16890 204 aaPredicted RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 CDKAL1Q5VV42 579 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 CEP135Q66GS9 1140 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 ZNF598Q86UK7 904 aaKnown RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 FAM186BQ8IYM0 893 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 CRIPAKQ8N1N5 446 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 RDH13Q8NBN7 331 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 BORCS6Q96GS4 357 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 EPAS1Q99814 870 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 LBHD1Q9BQE6 289 aaPredicted RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 MKNK1Q9BUB5 465 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 CCDC94Q9BW85 323 aaPredicted RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 HSD3B7Q9H2F3 369 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 SAMSN1Q9NSI8 373 aaKnown RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 FANCLQ9NW38 375 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 SNTG2Q9NY99 539 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 RBAKQ9NYW8 714 aaPredicted RBP9.2□□□□□ -0.94
SF3B3-212ENST00000568539 FRMD4BQ9Y2L6 1034 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 PCDHGA4Q9Y5G9 962 aa9.2□□□□□ -0.94
SF3B3-212ENST00000568539 TTC26A0AVF1 554 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 ZNF233A6NK53 670 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 MEIS3P2A8K0S8 358 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 BECN2A8MW95 431 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 EFCAB14O75071 495 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 RECQL4O94761 1208 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 GNA14O95837 355 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 EOMESO95936 686 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 FGBP02675 491 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 ADRB2P07550 413 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 CXCL8P10145 99 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 EPB41P11171 864 aaKnown RBP9.19□□□□□ -0.94
SF3B3-212ENST00000568539 ACTN1P12814 892 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 ITGA4P13612 1032 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 ZNF18P17022 549 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 AKAP5P24588 427 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 MARSP56192 900 aaKnown RBP9.19□□□□□ -0.94
SF3B3-212ENST00000568539 WNT7BP56706 349 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 MCCD1P59942 119 aaPredicted RBP9.19□□□□□ -0.94
SF3B3-212ENST00000568539 CYP24A1Q07973 514 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 SLC10A6Q3KNW5 377 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 TMEM240Q5SV17 173 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 PSRC1Q6PGN9 363 aaPredicted RBP9.19□□□□□ -0.94
SF3B3-212ENST00000568539 AGMOQ6ZNB7 445 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 ZNF365Q70YC5 407 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 OTOP2Q7RTS6 562 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 BRSK2Q8IWQ3 736 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 HACE1Q8IYU2 909 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 RNF214Q8ND24 703 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 PLEKHO2Q8TD55 490 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 LPPQ93052 612 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 PGBD4Q96DM1 585 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 LRCH3Q96II8 777 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 CNOT6LQ96LI5 555 aaKnown RBP9.19□□□□□ -0.94
SF3B3-212ENST00000568539 MFSD14AQ96MC6 490 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 ACAP3Q96P50 834 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.19□□□□□ -0.945e-10■□□□□ 10.8
SF3B3-212ENST00000568539 APOL6Q9BWW8 343 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 RBSNQ9H1K0 784 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 ELAC1Q9H777 363 aaKnown RBP9.19□□□□□ -0.94
SF3B3-212ENST00000568539 NPDC1Q9NQX5 325 aaPredicted RBP9.19□□□□□ -0.94
SF3B3-212ENST00000568539 TMEM161AQ9NX61 479 aa9.19□□□□□ -0.94
SF3B3-212ENST00000568539 MAGEA10P43363 369 aaPredicted RBP9.18□□□□□ -0.94
SF3B3-212ENST00000568539 YARSP54577 528 aaKnown RBP9.18□□□□□ -0.94
SF3B3-212ENST00000568539 WDR5P61964 334 aaKnown RBP9.18□□□□□ -0.94
SF3B3-212ENST00000568539 DEFB103AP81534 67 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 ENPEPQ07075 957 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 PSMD6Q15008 389 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 CCDC40Q4G0X9 1142 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 HSP90AA4PQ58FG1 418 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 XKR4Q5GH76 650 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 TCP11X2Q5H9J9 407 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 ALKAL1Q6UXT8 129 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 INTS8Q75QN2 995 aaKnown RBP9.18□□□□□ -0.94
SF3B3-212ENST00000568539 FRMD5Q7Z6J6 570 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 NPAS4Q8IUM7 802 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 FAM114A1Q8IWE2 563 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 RNF169Q8NCN4 708 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 PARD3BQ8TEW8 1205 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 HERVK_113Q902F9 699 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 SNX27Q96L92 541 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 CXCL16Q9H2A7 254 aa9.18□□□□□ -0.94
SF3B3-212ENST00000568539 ASB7Q9H672 318 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms