RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 VTI1AQ96AJ9 217 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 FIZ1Q96SL8 496 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 AGPAT1Q99943 283 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 LRRC4CQ9HCJ2 640 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 SEPT11Q9NVA2 429 aaKnown RBP14.21□□□□□ -0.13
VPS4A-204ENST00000566354 TAS2R14Q9NYV8 317 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 KCND2Q9NZV8 630 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 PARP2Q9UGN5 583 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 COG5Q9UP83 839 aa14.21□□□□□ -0.13
VPS4A-204ENST00000566354 PFASO15067 1338 aa14.21□□□□□ -0.14
VPS4A-204ENST00000566354 GHRP10912 638 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 EIF2AK2P19525 551 aaKnown RBP14.2□□□□□ -0.14
VPS4A-204ENST00000566354 RDXP35241 583 aaKnown RBP14.2□□□□□ -0.14
VPS4A-204ENST00000566354 MMP13P45452 471 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 CYP2J2P51589 502 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 ZNF157P51786 506 aaPredicted RBP14.2□□□□□ -0.14
VPS4A-204ENST00000566354 PPP2R5CQ13362 524 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 ZNF211Q13398 564 aaPredicted RBP14.2□□□□□ -0.14
VPS4A-204ENST00000566354 MDM1Q8TC05 714 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 CCT6BQ92526 530 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 DYDC2Q96IM9 177 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 PTPN18Q99952 460 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 JPH2Q9BR39 696 aaPredicted RBP14.2□□□□□ -0.14
VPS4A-204ENST00000566354 MOV10L1Q9BXT6 1211 aaKnown RBP14.2□□□□□ -0.14
VPS4A-204ENST00000566354 MAP3K20Q9NYL2 800 aaKnown RBP14.2□□□□□ -0.14
VPS4A-204ENST00000566354 CYP39A1Q9NYL5 469 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 PCYOX1Q9UHG3 505 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 ODF2LQ9ULJ1 636 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 RPTORQ8N122 1335 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 FOXN3O00409 490 aaPredicted RBP14.2□□□□□ -0.14
VPS4A-204ENST00000566354 BACH1O14867 736 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 PHF2O75151 1096 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 SHBGP04278 402 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 TRIM49P0CI25 452 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 TRIM49CP0CI26 452 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 COPB2P35606 906 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 MAP2K2P36507 400 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 SCTRP47872 440 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 MYBPC2Q14324 1141 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 ARHGAP44Q17R89 818 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 TKFCQ3LXA3 575 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 C6orf118Q5T5N4 469 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 PHLDB3Q6NSJ2 640 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 ZDHHC24Q6UX98 284 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 NCAPG2Q86XI2 1143 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 RASAL3Q86YV0 1011 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 RIOX2Q8IUF8 465 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 SLC9A9Q8IVB4 645 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 FUKQ8N0W3 1084 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 FBXO25Q8TCJ0 367 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 ZNF317Q96PQ6 595 aaPredicted RBP14.2□□□□□ -0.14
VPS4A-204ENST00000566354 NACC1Q96RE7 527 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 RMDN3Q96TC7 470 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 EHMT1Q9H9B1 1298 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.2□□□□□ -0.146e-8■■■■■ 126.2
VPS4A-204ENST00000566354 SNX24Q9Y343 169 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 PCNTO95613 3336 aa14.2□□□□□ -0.14
VPS4A-204ENST00000566354 LCTP09848 1927 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 PSMD10O75832 226 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 GGPS1O95749 300 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 KRT13P13646 458 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 PTGIRP43119 386 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 BFSP1Q12934 665 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 CYB5D1Q6P9G0 228 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 PALB2Q86YC2 1186 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 KSR1Q8IVT5 923 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 ANKS4BQ8N8V4 417 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 RNF25Q96BH1 459 aaPredicted RBP14.19□□□□□ -0.14
VPS4A-204ENST00000566354 RPS6KC1Q96S38 1066 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 TMEM109Q9BVC6 243 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 CTTNBP2NLQ9P2B4 639 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 MTRF1LQ9UGC7 380 aaKnown RBP14.19□□□□□ -0.14
VPS4A-204ENST00000566354 RGS16O15492 202 aaPredicted RBP14.19□□□□□ -0.14
VPS4A-204ENST00000566354 ASAP2O43150 1006 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 EXOC3O60645 756 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 CHN1P15882 459 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 CTNNA2P26232 953 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 ADCY2Q08462 1091 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 XRCC4Q13426 336 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 CEP55Q53EZ4 464 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 ODR4Q5SWX8 454 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 PARP9Q8IXQ6 854 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 SAMD3Q8N6K7 520 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 CCDC197Q8NCU1 140 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 CHST13Q8NET6 341 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 LMO3Q8TAP4 145 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 MORC4Q8TE76 937 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 SLC5A5Q92911 643 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 PXMP2Q9NR77 195 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 GRHL1Q9NZI5 618 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 PNMA3Q9UL41 463 aa14.19□□□□□ -0.14
VPS4A-204ENST00000566354 ZBTB39O15060 712 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 AGTP01019 485 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 FTLP02792 175 aaPredicted RBP14.18□□□□□ -0.14
VPS4A-204ENST00000566354 MMEP08473 750 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 ATXN8OSP0DMR3 200 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 ITGB5P18084 799 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 GPC5P78333 572 aa14.18□□□□□ -0.14
VPS4A-204ENST00000566354 MRPS9P82933 396 aaKnown RBP14.18□□□□□ -0.14
VPS4A-204ENST00000566354 CETN1Q12798 172 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms