RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 ADAM7Q9H2U9 754 aa20.15■□□□□ 0.82
CLN3-214ENST00000565140 RXFP1Q9HBX9 757 aa20.15■□□□□ 0.82
CLN3-214ENST00000565140 C11orf16Q9NQ32 467 aa20.15■□□□□ 0.82
CLN3-214ENST00000565140 LARSQ9P2J5 1176 aaKnown RBP20.15■□□□□ 0.82
CLN3-214ENST00000565140 SMIM28A0A1B0GU29 152 aa20.14■□□□□ 0.81
CLN3-214ENST00000565140 TEX28O15482 410 aa20.14■□□□□ 0.81
CLN3-214ENST00000565140 MEFVO15553 781 aaPredicted RBP20.14■□□□□ 0.81
CLN3-214ENST00000565140 ZNF131P52739 623 aa20.14■□□□□ 0.81
CLN3-214ENST00000565140 USP41Q3LFD5 358 aa20.14■□□□□ 0.81
CLN3-214ENST00000565140 XKR4Q5GH76 650 aa20.14■□□□□ 0.81
CLN3-214ENST00000565140 FOXD4L5Q5VV16 416 aaPredicted RBP20.14■□□□□ 0.81
CLN3-214ENST00000565140 KIAA1841Q6NSI8 718 aa20.14■□□□□ 0.81
CLN3-214ENST00000565140 RNF135Q8IUD6 432 aa20.14■□□□□ 0.81
CLN3-214ENST00000565140 MYCT1Q8N699 235 aa20.14■□□□□ 0.81
CLN3-214ENST00000565140 FOXD4L4Q8WXT5 416 aaPredicted RBP20.14■□□□□ 0.81
CLN3-214ENST00000565140 CCDC94Q9BW85 323 aaPredicted RBP20.14■□□□□ 0.81
CLN3-214ENST00000565140 HAPLN2Q9GZV7 340 aa20.14■□□□□ 0.81
CLN3-214ENST00000565140 DZANK1Q9NVP4 752 aa20.14■□□□□ 0.81
CLN3-214ENST00000565140 SSX2IPQ9Y2D8 614 aa20.14■□□□□ 0.81
CLN3-214ENST00000565140 MORC2Q9Y6X9 1032 aaPredicted RBP20.14■□□□□ 0.81
CLN3-214ENST00000565140 FAM86C2PA6NEL3 165 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 TOM1L1O75674 476 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 FAM13AO94988 1023 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 KRT18P05783 430 aaKnown RBP20.13■□□□□ 0.81
CLN3-214ENST00000565140 HARSP12081 509 aaKnown RBP20.13■□□□□ 0.81
CLN3-214ENST00000565140 NASPP49321 788 aaPredicted RBP20.13■□□□□ 0.81
CLN3-214ENST00000565140 ITIH3Q06033 890 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 SEZ6Q53EL9 994 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 RTP2Q5QGT7 225 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 CES5AQ6NT32 575 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 ZPBP2Q6X784 338 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 RIN2Q8WYP3 895 aaPredicted RBP20.13■□□□□ 0.81
CLN3-214ENST00000565140 KCNN1Q92952 543 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 FBXL18Q96ME1 805 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 ZMAT2Q96NC0 199 aaKnown RBP20.13■□□□□ 0.81
CLN3-214ENST00000565140 ACAP3Q96P50 834 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 FIZ1Q96SL8 496 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 PARVGQ9HBI0 331 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 GOLGA2P5Q9HBQ8 144 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 ANKFY1Q9P2R3 1169 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 TFIP11Q9UBB9 837 aaKnown RBP20.13■□□□□ 0.81
CLN3-214ENST00000565140 MUTYHQ9UIF7 546 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 DOCK6Q96HP0 2047 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 DENND4AQ7Z401 1863 aa20.13■□□□□ 0.81
CLN3-214ENST00000565140 SF3B1O75533 1304 aaKnown RBP eCLIP20.12■□□□□ 0.813e-9■■■■■ 164.7
CLN3-214ENST00000565140 DCXO43602 365 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 ALADP13716 330 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 YARSP54577 528 aaKnown RBP20.12■□□□□ 0.81
CLN3-214ENST00000565140 SOX4Q06945 474 aaPredicted RBP20.12■□□□□ 0.81
CLN3-214ENST00000565140 RRAGBQ5VZM2 374 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 PRSS55Q6UWB4 352 aaPredicted RBP20.12■□□□□ 0.81
CLN3-214ENST00000565140 CD300LGQ6UXG3 332 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 KRI1Q8N9T8 703 aaKnown RBP20.12■□□□□ 0.81
CLN3-214ENST00000565140 SPRYD3Q8NCJ5 442 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 LINC00301Q8NCQ3 95 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 SNX27Q96L92 541 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 PANK2Q9BZ23 570 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 ZHX3Q9H4I2 956 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 POMKQ9H5K3 350 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 TOPORSQ9NS56 1045 aaPredicted RBP20.12■□□□□ 0.81
CLN3-214ENST00000565140 CCDC39Q9UFE4 941 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 TBX20Q9UMR3 447 aa20.12■□□□□ 0.81
CLN3-214ENST00000565140 TECTAO75443 2155 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 A0A087X0B3 334 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 H0YCG3 227 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 CLDN3O15551 220 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 TRAK2O60296 914 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 ADH1AP07327 375 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 SPATA31D3P0C874 917 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 MYBP10242 640 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 RPL17P18621 184 aaKnown RBP20.11■□□□□ 0.81
CLN3-214ENST00000565140 SP100P23497 879 aaPredicted RBP20.11■□□□□ 0.81
CLN3-214ENST00000565140 CLCNKBP51801 687 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 MCL1Q07820 350 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 NOLC1Q14978 699 aaKnown RBP eCLIP20.11■□□□□ 0.81
CLN3-214ENST00000565140 UPP1Q16831 310 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 FAM171A1Q5VUB5 890 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 TMC5Q6UXY8 1006 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 SPATA31D4Q6ZUB0 917 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 DYMQ7RTS9 669 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 PALB2Q86YC2 1186 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 GLYCTKQ8IVS8 523 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 LRFN3Q9BTN0 628 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 STK17AQ9UEE5 414 aa20.11■□□□□ 0.81
CLN3-214ENST00000565140 ANK1P16157 1881 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 K7ENM7 598 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 GPR37L1O60883 481 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 HSP90AA1P07900 732 aaKnown RBP20.1■□□□□ 0.81
CLN3-214ENST00000565140 KCNE1P15382 129 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 NMT1P30419 496 aaKnown RBP20.1■□□□□ 0.81
CLN3-214ENST00000565140 STK38Q15208 465 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 SLC10A6Q3KNW5 377 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 HERC4Q5GLZ8 1057 aaPredicted RBP20.1■□□□□ 0.81
CLN3-214ENST00000565140 TMEM31Q5JXX7 168 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 DCLRE1AQ6PJP8 1040 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 CEP57Q86XR8 500 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 GPR65Q8IYL9 337 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 C3orf58Q8NDZ4 430 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 BICD1Q96G01 975 aa20.1■□□□□ 0.81
CLN3-214ENST00000565140 TTPALQ9BTX7 342 aa20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms