RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CCDC83Q8IWF9 413 aa18.6■□□□□ 0.57
CLN3-211ENST00000564091 C8orf76Q96K31 380 aa18.6■□□□□ 0.57
CLN3-211ENST00000564091 SNX27Q96L92 541 aa18.6■□□□□ 0.57
CLN3-211ENST00000564091 ADPGKQ9BRR6 497 aa18.6■□□□□ 0.57
CLN3-211ENST00000564091 GVINP1Q7Z2Y8 2422 aa18.59■□□□□ 0.57
CLN3-211ENST00000564091 CCL16O15467 120 aa18.59■□□□□ 0.57
CLN3-211ENST00000564091 SEC24BO95487 1268 aa18.59■□□□□ 0.57
CLN3-211ENST00000564091 C8AP07357 584 aa18.59■□□□□ 0.57
CLN3-211ENST00000564091 SPECC1Q5M775 1068 aa18.59■□□□□ 0.57
CLN3-211ENST00000564091 PPM1LQ5SGD2 360 aa18.59■□□□□ 0.57
CLN3-211ENST00000564091 NT5DC1Q5TFE4 455 aa18.59■□□□□ 0.57
CLN3-211ENST00000564091 ADSSL1Q8N142 457 aa18.59■□□□□ 0.57
CLN3-211ENST00000564091 ARHGEF3Q9NR81 526 aa18.59■□□□□ 0.57
CLN3-211ENST00000564091 POLIQ9UNA4 740 aa18.59■□□□□ 0.57
CLN3-211ENST00000564091 DCNP07585 359 aaKnown RBP18.58■□□□□ 0.56
CLN3-211ENST00000564091 ELAVL2Q12926 359 aaKnown RBP18.58■□□□□ 0.56
CLN3-211ENST00000564091 NBR1Q14596 966 aa18.58■□□□□ 0.56
CLN3-211ENST00000564091 PARM1Q6UWI2 310 aa18.58■□□□□ 0.56
CLN3-211ENST00000564091 FGF14Q92915 247 aa18.58■□□□□ 0.56
CLN3-211ENST00000564091 BHMT2Q9H2M3 363 aa18.58■□□□□ 0.56
CLN3-211ENST00000564091 SPTBN4Q9H254 2564 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 WDR87Q6ZQQ6 2873 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 B3GAT3O94766 335 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 HNRNPA1P09651 372 aaKnown RBP eCLIP18.57■□□□□ 0.56
CLN3-211ENST00000564091 OR1D2P34982 312 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 CCT6AP40227 531 aaKnown RBP18.57■□□□□ 0.56
CLN3-211ENST00000564091 GPC5P78333 572 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 PPP2R5AQ15172 486 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 TTC38Q5R3I4 469 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 RSPO2Q6UXX9 243 aaPredicted RBP18.57■□□□□ 0.56
CLN3-211ENST00000564091 ITFG1Q8TB96 612 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 SLC7A14Q8TBB6 771 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 IFT74Q96LB3 600 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 FOXP1Q9H334 677 aaPredicted RBP18.57■□□□□ 0.56
CLN3-211ENST00000564091 SLC2A4RGQ9NR83 387 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 CDH7Q9ULB5 785 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 LIMCH1Q9UPQ0 1083 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 KIAA1024Q9UPX6 916 aa18.57■□□□□ 0.56
CLN3-211ENST00000564091 EP300Q09472 2414 aaPredicted RBP18.57■□□□□ 0.56
CLN3-211ENST00000564091 DENND4AQ7Z401 1863 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 I3L4J1 428 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 FGFR3P22607 806 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 CLCNKBP51801 687 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 ORC2Q13416 577 aaPredicted RBP18.56■□□□□ 0.56
CLN3-211ENST00000564091 RAB33AQ14088 237 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 DCAF4L1Q3SXM0 396 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 AXDND1Q5T1B0 1012 aaPredicted RBP18.56■□□□□ 0.56
CLN3-211ENST00000564091 ATF7IP2Q5U623 682 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 HAUS3Q68CZ6 603 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 DCLRE1AQ6PJP8 1040 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 CD300LGQ6UXG3 332 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.56■□□□□ 0.56
CLN3-211ENST00000564091 C4orf32Q8N8J7 132 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 FBXO18Q8NFZ0 1043 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 FGF13Q92913 245 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 PPP1R10Q96QC0 940 aaKnown RBP18.56■□□□□ 0.56
CLN3-211ENST00000564091 FOXQ1Q9C009 403 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 GOLGA2P5Q9HBQ8 144 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 PPP4R2Q9NY27 417 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 SIT1Q9Y3P8 196 aa18.56■□□□□ 0.56
CLN3-211ENST00000564091 ZFP37Q9Y6Q3 630 aaPredicted RBP18.56■□□□□ 0.56
CLN3-211ENST00000564091 XYLBO75191 536 aa18.55■□□□□ 0.56
CLN3-211ENST00000564091 RBM25P49756 843 aaKnown RBP18.55■□□□□ 0.56
CLN3-211ENST00000564091 EFNA5P52803 228 aa18.55■□□□□ 0.56
CLN3-211ENST00000564091 PHLDB3Q6NSJ2 640 aa18.55■□□□□ 0.56
CLN3-211ENST00000564091 PDXDC1Q6P996 788 aa18.55■□□□□ 0.56
CLN3-211ENST00000564091 KCNG4Q8TDN1 519 aa18.55■□□□□ 0.56
CLN3-211ENST00000564091 KIFAP3Q92845 792 aa18.55■□□□□ 0.56
CLN3-211ENST00000564091 HCFC1R1Q9NWW0 138 aa18.55■□□□□ 0.56
CLN3-211ENST00000564091 DLGAP2Q9P1A6 1054 aa18.55■□□□□ 0.56
CLN3-211ENST00000564091 LRWD1Q9UFC0 647 aa18.55■□□□□ 0.56
CLN3-211ENST00000564091 CDY1Q9Y6F8 540 aa18.55■□□□□ 0.56
CLN3-211ENST00000564091 R4GN57 208 aa18.55■□□□□ 0.56
CLN3-211ENST00000564091 PLXNA3P51805 1871 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 K7ERI5 159 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 LRRN2O75325 713 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 GLULP15104 373 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 MUTP22033 750 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 TKTP29401 623 aaKnown RBP18.54■□□□□ 0.56
CLN3-211ENST00000564091 HOXA9P31269 272 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 BRCC3P46736 316 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 FXR2P51116 673 aaKnown RBP eCLIP18.54■□□□□ 0.56
CLN3-211ENST00000564091 OSTNP61366 133 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 SNW1Q13573 536 aaKnown RBP18.54■□□□□ 0.56
CLN3-211ENST00000564091 GNL2Q13823 731 aaKnown RBP18.54■□□□□ 0.56
CLN3-211ENST00000564091 UPP1Q16831 310 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 CEP120Q8N960 986 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 C3orf58Q8NDZ4 430 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 LLPHQ9BRT6 129 aaKnown RBP18.54■□□□□ 0.56
CLN3-211ENST00000564091 DDX19AQ9NUU7 478 aaKnown RBP18.54■□□□□ 0.56
CLN3-211ENST00000564091 DNMT3BQ9UBC3 853 aaKnown RBP18.54■□□□□ 0.56
CLN3-211ENST00000564091 MTRRQ9UBK8 725 aa18.54■□□□□ 0.56
CLN3-211ENST00000564091 C2orf16Q68DN1 1984 aa18.53■□□□□ 0.56
CLN3-211ENST00000564091 SMIM28A0A1B0GU29 152 aa18.53■□□□□ 0.56
CLN3-211ENST00000564091 CCDC169A6NNP5 214 aa18.53■□□□□ 0.56
CLN3-211ENST00000564091 TMEM189-UBE2V1I3L0A0 370 aa18.53■□□□□ 0.56
CLN3-211ENST00000564091 PEX3P56589 373 aa18.53■□□□□ 0.56
CLN3-211ENST00000564091 SOX4Q06945 474 aaPredicted RBP18.53■□□□□ 0.56
CLN3-211ENST00000564091 SNX29Q8TEQ0 813 aa18.53■□□□□ 0.56
CLN3-211ENST00000564091 CDT1Q9H211 546 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms