RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CETPP11597 493 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 GZMAP12544 262 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 NAA25Q14CX7 972 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 MIER3Q7Z3K6 550 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 HAUS6Q7Z4H7 955 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 SRRM1Q8IYB3 904 aaKnown RBP14.12□□□□□ -0.15
CLN3-210ENST00000563874 KCTD17Q8N5Z5 321 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 PSPC1Q8WXF1 523 aaKnown RBP14.12□□□□□ -0.15
CLN3-210ENST00000563874 KLHL29Q96CT2 875 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 FAM212AQ96EL1 285 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 ACCSQ96QU6 501 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 TACO1Q9BSH4 297 aaKnown RBP14.12□□□□□ -0.15
CLN3-210ENST00000563874 LRRC19Q9H756 370 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 FBXO28Q9NVF7 368 aa14.12□□□□□ -0.15
CLN3-210ENST00000563874 OAS1P00973 400 aaKnown RBP14.11□□□□□ -0.15
CLN3-210ENST00000563874 CYP1A2P05177 515 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 ITGB5P18084 799 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 PEX3P56589 373 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 FITM2Q8N6M3 262 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 RMDN2Q96LZ7 410 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 ROPN1BQ9BZX4 212 aaPredicted RBP14.11□□□□□ -0.15
CLN3-210ENST00000563874 TMEM206Q9H813 350 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 ROPN1Q9HAT0 212 aaPredicted RBP14.11□□□□□ -0.15
CLN3-210ENST00000563874 KCND2Q9NZV8 630 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 USP21Q9UK80 565 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 GTF3C4Q9UKN8 822 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 R3HDM2Q9Y2K5 976 aaKnown RBP14.11□□□□□ -0.15
CLN3-210ENST00000563874 ZHX2Q9Y6X8 837 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 SPATA31A6Q5VVP1 1343 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 KLRG2A4D1S0 409 aaPredicted RBP14.11□□□□□ -0.15
CLN3-210ENST00000563874 ANP32DO95626 131 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 KRT16P08779 473 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 VIL1P09327 827 aaKnown RBP14.11□□□□□ -0.15
CLN3-210ENST00000563874 KRT5P13647 590 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 ADCY8P40145 1251 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 TLDC1Q6P9B6 456 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 SPATA21Q7Z572 469 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 TGS1Q96RS0 853 aaKnown RBP14.11□□□□□ -0.15
CLN3-210ENST00000563874 PAIP2Q9BPZ3 127 aaKnown RBP14.11□□□□□ -0.15
CLN3-210ENST00000563874 PI4K2AQ9BTU6 479 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 O00370 1275 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 MTA2O94776 668 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 TTC4O95801 387 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 CDC25CP30307 473 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 TCEAL1Q15170 157 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 NBPF20Q3BBV1 942 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 ZNF568Q3ZCX4 644 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 FAM47EQ6ZV65 393 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 TAS1R2Q8TE23 839 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 MIEF2Q96C03 454 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 C9orf72Q96LT7 481 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 DONSONQ9NYP3 566 aa14.11□□□□□ -0.15
CLN3-210ENST00000563874 CFAP73A6NFT4 308 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 MAPK4P31152 587 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 STX2P32856 288 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 GJC1P36383 396 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 MFAP3P55082 362 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 SHC3Q92529 594 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 SERPINB12Q96P63 405 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 WHRNQ9P202 907 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 FSCN2O14926 492 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 IVDP26440 423 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 RARRES1P49788 294 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 COPS2P61201 443 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 ZNF268Q14587 947 aaPredicted RBP14.1□□□□□ -0.15
CLN3-210ENST00000563874 LTBP1Q14766 1721 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 SNRNP35Q16560 246 aaKnown RBP14.1□□□□□ -0.15
CLN3-210ENST00000563874 RHBDF2Q6PJF5 856 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 C12orf50Q8NA57 414 aaPredicted RBP14.1□□□□□ -0.15
CLN3-210ENST00000563874 IL31RAQ8NI17 732 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 SNF8Q96H20 258 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 KCNH7Q9NS40 1196 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 ANAPC5Q9UJX4 755 aa14.1□□□□□ -0.15
CLN3-210ENST00000563874 PLS3P13797 630 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 SSTR3P32745 418 aaPredicted RBP14.09□□□□□ -0.15
CLN3-210ENST00000563874 CDR2Q01850 454 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 GALNTL6Q49A17 601 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 B3GNT9Q6UX72 402 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 MORC4Q8TE76 937 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 CKAP2Q8WWK9 683 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 CPA5Q8WXQ8 436 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 TMX4Q9H1E5 349 aaPredicted RBP14.09□□□□□ -0.15
CLN3-210ENST00000563874 XPO5Q9HAV4 1204 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLN3-210ENST00000563874 NINJ2Q9NZG7 142 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 ZBTB12Q9Y330 459 aaPredicted RBP14.09□□□□□ -0.15
CLN3-210ENST00000563874 TCP10L2B9ZVM9 353 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 P4HA2O15460 535 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 ATF2P15336 505 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 ITIH2P19823 946 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 ADSSP30520 456 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 MGAT5Q09328 741 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 HP1BP3Q5SSJ5 553 aaPredicted RBP14.09□□□□□ -0.15
CLN3-210ENST00000563874 DACT2Q5SW24 774 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 CGB2Q6NT52 195 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 CYP4F22Q6NT55 531 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 PODNQ7Z5L7 613 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 RNF217Q8TC41 542 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 HELQQ8TDG4 1101 aa14.09□□□□□ -0.15
CLN3-210ENST00000563874 PRMT6Q96LA8 375 aaPredicted RBP14.09□□□□□ -0.15
CLN3-210ENST00000563874 ADAM33Q9BZ11 813 aa14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 492.4 ms