RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CCDC65Q8IXS2 484 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 GPR65Q8IYL9 337 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 BCL7CQ8WUZ0 217 aaPredicted RBP14.64□□□□□ -0.07
CLK3-213ENST00000563842 CASP10Q92851 521 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 DHX58Q96C10 678 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 DNAJC19Q96DA6 116 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 ZBTB45Q96K62 511 aaPredicted RBP14.64□□□□□ -0.07
CLK3-213ENST00000563842 SPATA32Q96LK8 384 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 HERC2P3Q9BVR0 1158 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 MRPL44Q9H9J2 332 aaKnown RBP14.64□□□□□ -0.07
CLK3-213ENST00000563842 MARCH5Q9NX47 278 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 EXOC7Q9UPT5 735 aa14.64□□□□□ -0.07
CLK3-213ENST00000563842 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.64□□□□□ -0.07
CLK3-213ENST00000563842 GRXCR2A6NFK2 248 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 TNFRSF10AO00220 468 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 ABLIM1O14639 778 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 TBX10O75333 385 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 HOXB8P17481 243 aaPredicted RBP14.63□□□□□ -0.07
CLK3-213ENST00000563842 NMT1P30419 496 aaKnown RBP14.63□□□□□ -0.07
CLK3-213ENST00000563842 OSTNP61366 133 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 NUCB2P80303 420 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 ELAVL2Q12926 359 aaKnown RBP14.63□□□□□ -0.07
CLK3-213ENST00000563842 COASYQ13057 564 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 SMAD4Q13485 552 aaKnown RBP14.63□□□□□ -0.07
CLK3-213ENST00000563842 USP41Q3LFD5 358 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 XKR4Q5GH76 650 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 HERC4Q5GLZ8 1057 aaPredicted RBP14.63□□□□□ -0.07
CLK3-213ENST00000563842 SLFN12LQ6IEE8 588 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 FUT10Q6P4F1 479 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 ALKAL1Q6UXT8 129 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 STXBP4Q6ZWJ1 553 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 ZNF720Q7Z2F6 126 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 SFR1Q86XK3 245 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 MAP4K3Q8IVH8 894 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 PIAS4Q8N2W9 510 aaPredicted RBP14.63□□□□□ -0.07
CLK3-213ENST00000563842 CEP120Q8N960 986 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 MSLNLQ96KJ4 702 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 PPP1R10Q96QC0 940 aaKnown RBP14.63□□□□□ -0.07
CLK3-213ENST00000563842 FIZ1Q96SL8 496 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 SCAND2PQ9GZW5 306 aaPredicted RBP14.63□□□□□ -0.07
CLK3-213ENST00000563842 PLEKHA5Q9HAU0 1116 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 OLFML3Q9NRN5 406 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 PANK4Q9NVE7 773 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 KBTBD4Q9NVX7 518 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 PCDHB13Q9Y5F0 798 aa14.63□□□□□ -0.07
CLK3-213ENST00000563842 SF3B1O75533 1304 aaKnown RBP eCLIP14.63□□□□□ -0.07
CLK3-213ENST00000563842 SMIM28A0A1B0GU29 152 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 CASTOR2A6NHX0 329 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 OGTO15294 1046 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 POLR2DO15514 142 aaKnown RBP14.62□□□□□ -0.07
CLK3-213ENST00000563842 CLASP2O75122 1294 aaKnown RBP14.62□□□□□ -0.07
CLK3-213ENST00000563842 GLP2RO95838 553 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 CLTAP09496 248 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 KCNE1P15382 129 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 GLUD2P49448 558 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 CREMQ03060 361 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 DLX2Q07687 328 aaPredicted RBP14.62□□□□□ -0.07
CLK3-213ENST00000563842 POSTNQ15063 836 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 PTPN14Q15678 1187 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 E2F4Q16254 413 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 TPRNQ4KMQ1 711 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 RESP18Q5W5W9 173 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 RNF168Q8IYW5 571 aaPredicted RBP14.62□□□□□ -0.07
CLK3-213ENST00000563842 DDX27Q96GQ7 796 aaKnown RBP14.62□□□□□ -0.07
CLK3-213ENST00000563842 SNX27Q96L92 541 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 TSPAN18Q96SJ8 248 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 VN1R3Q9BXE9 311 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP14.62□□□□□ -0.07
CLK3-213ENST00000563842 CNTN3Q9P232 1028 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 PRKAG3Q9UGI9 489 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 DPP7Q9UHL4 492 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 ZDHHC9Q9Y397 364 aa14.62□□□□□ -0.07
CLK3-213ENST00000563842 ARIH1Q9Y4X5 557 aaPredicted RBP14.62□□□□□ -0.07
CLK3-213ENST00000563842 ANK1P16157 1881 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 VWA8A3KMH1 1905 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 FRMD3A2A2Y4 597 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 TMEM189-UBE2V1I3L0A0 370 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 MBTPS2O43462 519 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 XPOTO43592 962 aaKnown RBP14.61□□□□□ -0.07
CLK3-213ENST00000563842 TRAPPC3O43617 180 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 GCNT3O95395 438 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 ADH1AP07327 375 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 KLRC2P26717 231 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 DSG1Q02413 1049 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 KCNC3Q14003 757 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 NAB2Q15742 525 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 CLUL1Q15846 466 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 GLRA4Q5JXX5 417 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 ADALQ6DHV7 355 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 ANKRD54Q6NXT1 300 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 LLGL2Q6P1M3 1020 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 PDXDC1Q6P996 788 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 ELMSAN1Q6PJG2 1045 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 DCLRE1AQ6PJP8 1040 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 CD302Q8IX05 232 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 CEP57L1Q8IYX8 460 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 SMRP1Q8NCR6 262 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 LEO1Q8WVC0 666 aaPredicted RBP14.61□□□□□ -0.07
CLK3-213ENST00000563842 AUTS2Q8WXX7 1259 aa14.61□□□□□ -0.07
CLK3-213ENST00000563842 ACCSQ96QU6 501 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms