RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 TSPAN14Q8NG11 270 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 MLXIPLQ9NP71 852 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 IPPQ9Y573 584 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 CLTCL1P53675 1640 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 PLCG1P19174 1290 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 IFNA8P32881 189 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 NAA20P61599 178 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 MECOMQ03112 1051 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 ZC3H12AQ5D1E8 599 aaKnown RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 TMC3Q7Z5M5 1100 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 CSRNP1Q96S65 589 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 TEX13BQ9BXU2 312 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 PREBQ9HCU5 417 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 MRPL47Q9HD33 250 aaKnown RBP6.6□□□□□ -1.35
CLK3-212ENST00000563418 DNAJB4Q9UDY4 337 aa6.6□□□□□ -1.35
CLK3-212ENST00000563418 ARHGEF5Q12774 1597 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 SGK1O00141 431 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 ZC3H11AO75152 810 aaKnown RBP eCLIP6.59□□□□□ -1.35
CLK3-212ENST00000563418 MYBL1P10243 752 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 KCNJ2P63252 427 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 CASC4Q6P4E1 433 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 TTC30AQ86WT1 665 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 VPS37AQ8NEZ2 397 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 MDM1Q8TC05 714 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 ADNPQ9H2P0 1102 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 CENPXA8MT69 81 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 NCK2O43639 380 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 MED26O95402 600 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 UQCRBP14927 111 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 USP11P51784 963 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 IST1P53990 364 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 TAB1Q15750 504 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 GINS4Q9BRT9 223 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 CHID1Q9BWS9 393 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 WHRNQ9P202 907 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 SPEF1Q9Y4P9 236 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 ATP10BO94823 1461 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 MYO5CQ9NQX4 1742 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 HNRNPCL2B2RXH8 293 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 TOM1O60784 492 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 OR52Z1P0C646 297 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 EPHB2P29323 1055 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 PTPN12Q05209 780 aaKnown RBP6.59□□□□□ -1.35
CLK3-212ENST00000563418 SLC29A2Q14542 456 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 ANGPT1Q15389 498 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 SMYD4Q8IYR2 804 aaPredicted RBP6.59□□□□□ -1.35
CLK3-212ENST00000563418 TTC39CQ8N584 583 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 CDHR1Q96JP9 859 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 PLEKHF1Q96S99 279 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 MMTAG2Q9BU76 263 aaKnown RBP6.59□□□□□ -1.35
CLK3-212ENST00000563418 RAB26Q9ULW5 256 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 CROCC2H7BZ55 1655 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 MTSS1O43312 755 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 GALK1P51570 392 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 ACVR2BQ13705 512 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 HP1BP3Q5SSJ5 553 aaPredicted RBP6.59□□□□□ -1.35
CLK3-212ENST00000563418 OSCARQ8IYS5 282 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 MLPHQ9BV36 600 aaPredicted RBP6.59□□□□□ -1.35
CLK3-212ENST00000563418 RPRD1BQ9NQG5 326 aaKnown RBP6.59□□□□□ -1.35
CLK3-212ENST00000563418 PNPLA3Q9NST1 481 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 GCNT4Q9P109 453 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 ATP10DQ9P241 1426 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 GPAA1O43292 621 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 HSPD1P10809 573 aaKnown RBP6.59□□□□□ -1.35
CLK3-212ENST00000563418 RXRAP19793 462 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 HPCAP84074 193 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 NIPAL1Q6NVV3 410 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 PRUNE1Q86TP1 453 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 BTBD9Q96Q07 612 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 CYP4F11Q9HBI6 524 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 CLIC5Q9NZA1 410 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 SOX13Q9UN79 622 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 KCNJ14Q9UNX9 436 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 CDY2AQ9Y6F7 541 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 CDY1Q9Y6F8 540 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 C1orf232A0A0U1RR37 186 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 KANSL1LA0AUZ9 987 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 OPLAHO14841 1288 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 PYGMP11217 842 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 ATF7P17544 494 aaPredicted RBP6.59□□□□□ -1.35
CLK3-212ENST00000563418 NFKBIAP25963 317 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 YWHAEP62258 255 aaKnown RBP6.59□□□□□ -1.35
CLK3-212ENST00000563418 CAPN12Q6ZSI9 719 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 CYP2U1Q7Z449 544 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 SMYD1Q8NB12 490 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 TTC13Q8NBP0 860 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 OR2W6PQ8NHA6 318 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 NEDD1Q8NHV4 660 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 PRCCQ92733 491 aaPredicted RBP6.59□□□□□ -1.35
CLK3-212ENST00000563418 TOPBP1Q92547 1522 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 BTBD18B2RXH4 712 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 RAD51BO15315 384 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 LYNP07948 512 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 IFNAR1P17181 557 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 GSTO1P78417 241 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 DAB2P98082 770 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 PTPN21Q16825 1174 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 SLC39A3Q9BRY0 314 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 MAF1Q9H063 256 aa6.59□□□□□ -1.35
CLK3-212ENST00000563418 ADAMTS1Q9UHI8 967 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms