RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 PCDHB6Q9Y5E3 794 aa17.35■□□□□ 0.37
CLK3-211ENST00000563297 VWA8A3KMH1 1905 aa17.34■□□□□ 0.37
CLK3-211ENST00000563297 K7ERI5 159 aa17.34■□□□□ 0.37
CLK3-211ENST00000563297 PI15O43692 258 aa17.34■□□□□ 0.37
CLK3-211ENST00000563297 DCAF4L1Q3SXM0 396 aa17.34■□□□□ 0.37
CLK3-211ENST00000563297 CWF19L1Q69YN2 538 aaKnown RBP17.34■□□□□ 0.37
CLK3-211ENST00000563297 SLC44A3Q8N4M1 653 aa17.34■□□□□ 0.37
CLK3-211ENST00000563297 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.34■□□□□ 0.37
CLK3-211ENST00000563297 DAXXQ9UER7 740 aaPredicted RBP17.34■□□□□ 0.37
CLK3-211ENST00000563297 LAMP2P13473 410 aa17.33■□□□□ 0.36
CLK3-211ENST00000563297 IGFBP6P24592 240 aaPredicted RBP17.33■□□□□ 0.36
CLK3-211ENST00000563297 PSMD5Q16401 504 aa17.33■□□□□ 0.36
CLK3-211ENST00000563297 IL17AQ16552 155 aa17.33■□□□□ 0.36
CLK3-211ENST00000563297 ATF7IP2Q5U623 682 aa17.33■□□□□ 0.36
CLK3-211ENST00000563297 SNX29Q8TEQ0 813 aa17.33■□□□□ 0.36
CLK3-211ENST00000563297 NXPE3Q969Y0 559 aa17.33■□□□□ 0.36
CLK3-211ENST00000563297 WNT16Q9UBV4 365 aa17.33■□□□□ 0.36
CLK3-211ENST00000563297 FBXL21Q9UKT6 434 aa17.33■□□□□ 0.36
CLK3-211ENST00000563297 STK24Q9Y6E0 443 aa17.33■□□□□ 0.36
CLK3-211ENST00000563297 PROB1E7EW31 1015 aa17.32■□□□□ 0.36
CLK3-211ENST00000563297 E9PMD0 336 aa17.32■□□□□ 0.36
CLK3-211ENST00000563297 ADAM12O43184 909 aa17.32■□□□□ 0.36
CLK3-211ENST00000563297 AOC1P19801 751 aa17.32■□□□□ 0.36
CLK3-211ENST00000563297 PEX3P56589 373 aa17.32■□□□□ 0.36
CLK3-211ENST00000563297 ELAVL2Q12926 359 aaKnown RBP17.32■□□□□ 0.36
CLK3-211ENST00000563297 SIX5Q8N196 739 aa17.32■□□□□ 0.36
CLK3-211ENST00000563297 PPP1R10Q96QC0 940 aaKnown RBP17.32■□□□□ 0.36
CLK3-211ENST00000563297 RAB34Q9BZG1 259 aa17.32■□□□□ 0.36
CLK3-211ENST00000563297 FBXW11Q9UKB1 542 aa17.32■□□□□ 0.36
CLK3-211ENST00000563297 DNM3Q9UQ16 869 aa17.32■□□□□ 0.36
CLK3-211ENST00000563297 TNFSF13BQ9Y275 285 aa17.32■□□□□ 0.36
CLK3-211ENST00000563297 RIF1Q5UIP0 2472 aaKnown RBP17.31■□□□□ 0.36
CLK3-211ENST00000563297 KRBA1A5PL33 1030 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 PP2D1A8MPX8 630 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 ST18O60284 1047 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 GFRA3O60609 400 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 CFHP08603 1231 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 CDC25AP30304 524 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 NPTX2P47972 431 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 C8orf34Q49A92 452 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 GLRA4Q5JXX5 417 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 DCLRE1AQ6PJP8 1040 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 CD300LGQ6UXG3 332 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 GRASPQ7Z6J2 395 aaPredicted RBP17.31■□□□□ 0.36
CLK3-211ENST00000563297 DAW1Q8N136 415 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 ACO2Q99798 780 aaKnown RBP17.31■□□□□ 0.36
CLK3-211ENST00000563297 TMEM134Q9H6X4 195 aa17.31■□□□□ 0.36
CLK3-211ENST00000563297 CCDC169A6NNP5 214 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 ANHXE9PGG2 379 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 TMEM189-UBE2V1I3L0A0 370 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 LAD1O00515 517 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 B3GAT3O94766 335 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 HNRNPA1P09651 372 aaKnown RBP eCLIP17.3■□□□□ 0.36
CLK3-211ENST00000563297 FGFR3P22607 806 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 PRPHP41219 470 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 CLCNKBP51801 687 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 RAB33AQ14088 237 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 UPP1Q16831 310 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 KRT79Q5XKE5 535 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 RINT1Q6NUQ1 792 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 PDXDC1Q6P996 788 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 ALKAL1Q6UXT8 129 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.3■□□□□ 0.36
CLK3-211ENST00000563297 C1orf186Q6ZWK4 172 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 GET4Q7L5D6 327 aaPredicted RBP17.3■□□□□ 0.36
CLK3-211ENST00000563297 TAS1R3Q7RTX0 852 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 KCNK18Q7Z418 384 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 CEP120Q8N960 986 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 RTP3Q9BQQ7 232 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 MMTAG2Q9BU76 263 aaKnown RBP17.3■□□□□ 0.36
CLK3-211ENST00000563297 PTPRHQ9HD43 1115 aa17.3■□□□□ 0.36
CLK3-211ENST00000563297 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.3■□□□□ 0.36
CLK3-211ENST00000563297 SMIM28A0A1B0GU29 152 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 HIP1RO75146 1068 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 C8AP07357 584 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 SRFP11831 508 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 FSHRP23945 695 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 OR1D2P34982 312 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 NBL1P41271 181 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 GRM5P41594 1212 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 NTHL1P78549 312 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 MAPK7Q13164 816 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 HTR4Q13639 388 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 XKR4Q5GH76 650 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 PPM1LQ5SGD2 360 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 LIN9Q5TKA1 542 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 RSPO2Q6UXX9 243 aaPredicted RBP17.29■□□□□ 0.36
CLK3-211ENST00000563297 DTHD1Q6ZMT9 781 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 APBB1IPQ7Z5R6 666 aaPredicted RBP17.29■□□□□ 0.36
CLK3-211ENST00000563297 ST13P5Q8NFI4 369 aaPredicted RBP17.29■□□□□ 0.36
CLK3-211ENST00000563297 RUSC1Q9BVN2 902 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 CDT1Q9H211 546 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 GOLGA2P5Q9HBQ8 144 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 ARHGAP28Q9P2N2 729 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 ZFP37Q9Y6Q3 630 aaPredicted RBP17.29■□□□□ 0.36
CLK3-211ENST00000563297 NOTCH4Q99466 2003 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 MYO15AQ9UKN7 3530 aa17.29■□□□□ 0.36
CLK3-211ENST00000563297 FAM186AA6NE01 2351 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 SFI1A8K8P3 1242 aa17.28■□□□□ 0.36
CLK3-211ENST00000563297 STK25O00506 426 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 330.2 ms