RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 KLK14Q9P0G3 267 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 MAGEC2Q9UBF1 373 aaPredicted RBP18.02■□□□□ 0.48
VPS4A-202ENST00000562754 PARP2Q9UGN5 583 aa18.02■□□□□ 0.48
VPS4A-202ENST00000562754 COL4A6Q14031 1691 aa18.02■□□□□ 0.47
VPS4A-202ENST00000562754 LRRIQ3A6PVS8 624 aaPredicted RBP18.01■□□□□ 0.47
VPS4A-202ENST00000562754 LACTBL1A8MY62 500 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 KRT13P13646 458 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 MTIF2P46199 727 aaKnown RBP18.01■□□□□ 0.47
VPS4A-202ENST00000562754 VAMP7P51809 220 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 WDR5P61964 334 aaKnown RBP18.01■□□□□ 0.47
VPS4A-202ENST00000562754 TPM4P67936 248 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 SPAG1Q07617 926 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 PSRC1Q6PGN9 363 aaPredicted RBP18.01■□□□□ 0.47
VPS4A-202ENST00000562754 ALKAL1Q6UXT8 129 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 OTOP2Q7RTS6 562 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 CREBRFQ8IUR6 639 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 EFCAB13Q8IY85 973 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 HACE1Q8IYU2 909 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 CRIPAKQ8N1N5 446 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 TMC2Q8TDI7 906 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 PARD3BQ8TEW8 1205 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 SLC35C1Q96A29 364 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 CCDC127Q96BQ5 260 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 FAM212AQ96EL1 285 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 LBHD1Q9BQE6 289 aaPredicted RBP18.01■□□□□ 0.47
VPS4A-202ENST00000562754 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.01■□□□□ 0.473e-6■□□□□ 8.6
VPS4A-202ENST00000562754 ELAC1Q9H777 363 aaKnown RBP18.01■□□□□ 0.47
VPS4A-202ENST00000562754 TMEM161AQ9NX61 479 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 TAB2Q9NYJ8 693 aa18.01■□□□□ 0.47
VPS4A-202ENST00000562754 LIMA1Q9UHB6 759 aaKnown RBP18.01■□□□□ 0.47
VPS4A-202ENST00000562754 FSD2A1L4K1 749 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 BAIAP3O94812 1187 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 IL18RAPO95256 599 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 NFICP08651 508 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 ACTN1P12814 892 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 MLH1P40692 756 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 YARSP54577 528 aaKnown RBP18■□□□□ 0.47
VPS4A-202ENST00000562754 DEFB103AP81534 67 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 PPP2R3AQ06190 1150 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 XKR4Q5GH76 650 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 DCAF17Q5H9S7 520 aaPredicted RBP18■□□□□ 0.47
VPS4A-202ENST00000562754 CLLU1OSQ5K130 101 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 LMBRD2Q68DH5 695 aaPredicted RBP18■□□□□ 0.47
VPS4A-202ENST00000562754 PGBD4Q96DM1 585 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 ZFP42Q96MM3 310 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 GAD1Q99259 594 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 CGRRF1Q99675 332 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 RSAD1Q9HA92 442 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 CNTN3Q9P232 1028 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 GIT1Q9Y2X7 761 aa18■□□□□ 0.47
VPS4A-202ENST00000562754 FNDC1Q4ZHG4 1894 aaPredicted RBP17.99■□□□□ 0.47
VPS4A-202ENST00000562754 PTGESO14684 152 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 EFCAB14O75071 495 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 EOMESO95936 686 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 FGBP02675 491 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 DLATP10515 647 aaKnown RBP17.99■□□□□ 0.47
VPS4A-202ENST00000562754 FGFR1P11362 822 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 CDK11BP21127 795 aaKnown RBP17.99■□□□□ 0.47
VPS4A-202ENST00000562754 MAGEA10P43363 369 aaPredicted RBP17.99■□□□□ 0.47
VPS4A-202ENST00000562754 RGS19P49795 217 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 AFF1P51825 1210 aaKnown RBP17.99■□□□□ 0.47
VPS4A-202ENST00000562754 COPB1P53618 953 aaKnown RBP17.99■□□□□ 0.47
VPS4A-202ENST00000562754 ENPEPQ07075 957 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 PPP3CAQ08209 521 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 MAN2A1Q16706 1144 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 MIIPQ5JXC2 388 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 GLRA4Q5JXX5 417 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 TCERG1LQ5VWI1 586 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 JADE1Q6IE81 842 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 NPAS4Q8IUM7 802 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 TMEM130Q8N3G9 435 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 ZMAT2Q96NC0 199 aaKnown RBP17.99■□□□□ 0.47
VPS4A-202ENST00000562754 POP1Q99575 1024 aaKnown RBP17.99■□□□□ 0.47
VPS4A-202ENST00000562754 TUBGCP2Q9BSJ2 902 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 PLEKHA5Q9HAU0 1116 aa17.99■□□□□ 0.47
VPS4A-202ENST00000562754 TDRD15B5MCY1 1934 aaKnown RBP17.99■□□□□ 0.47
VPS4A-202ENST00000562754 ARL5CA6NH57 179 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 INPPL1O15357 1258 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 AP5Z1O43299 807 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 GATMP50440 423 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 CLDN10P78369 228 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 FANCCQ00597 558 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 SURF1Q15526 300 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 GSTCDQ8NEC7 633 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 OR5B17Q8NGF7 314 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 HELQQ8TDG4 1101 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 HERVK_113Q902F9 699 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 ZNF516Q92618 1163 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 FNBP1Q96RU3 617 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 ASB7Q9H672 318 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 MIOSQ9NXC5 875 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 CXXC1Q9P0U4 656 aaPredicted RBP17.98■□□□□ 0.47
VPS4A-202ENST00000562754 PLAGL2Q9UPG8 496 aa17.98■□□□□ 0.47
VPS4A-202ENST00000562754 UTP18Q9Y5J1 556 aaKnown RBP eCLIP17.98■□□□□ 0.47
VPS4A-202ENST00000562754 ZBBXA8MT70 800 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 TULP1O00294 542 aaPredicted RBP17.97■□□□□ 0.47
VPS4A-202ENST00000562754 OFD1O75665 1012 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 CAPN15O75808 1086 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 AMHP03971 560 aa17.97■□□□□ 0.47
VPS4A-202ENST00000562754 PRKCSHP14314 528 aaPredicted RBP17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms