RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SNX29Q8TEQ0 813 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 HDAC7Q8WUI4 952 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 NXPE3Q969Y0 559 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 COLEC11Q9BWP8 271 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 CCDC113Q9H0I3 377 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 FZD8Q9H461 694 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 PLEKHA4Q9H4M7 779 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 SNTG2Q9NY99 539 aa20.96■□□□□ 0.95
VPS35-202ENST00000561713 NR1I2O75469 434 aa20.95■□□□□ 0.94
VPS35-202ENST00000561713 RECQL4O94761 1208 aa20.95■□□□□ 0.94
VPS35-202ENST00000561713 CD2BP2O95400 341 aaKnown RBP20.95■□□□□ 0.94
VPS35-202ENST00000561713 LMNAP02545 664 aaKnown RBP20.95■□□□□ 0.94
VPS35-202ENST00000561713 RPL17P18621 184 aaKnown RBP20.95■□□□□ 0.94
VPS35-202ENST00000561713 FXR2P51116 673 aaKnown RBP eCLIP20.95■□□□□ 0.948e-12■■■□□ 17.3
VPS35-202ENST00000561713 PRPF4BQ13523 1007 aaKnown RBP20.95■□□□□ 0.94
VPS35-202ENST00000561713 LILRA6Q6PI73 481 aa20.95■□□□□ 0.94
VPS35-202ENST00000561713 GET4Q7L5D6 327 aaPredicted RBP20.95■□□□□ 0.94
VPS35-202ENST00000561713 PRIMPOLQ96LW4 560 aa20.95■□□□□ 0.94
VPS35-202ENST00000561713 DDX19AQ9NUU7 478 aaKnown RBP20.95■□□□□ 0.94
VPS35-202ENST00000561713 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP20.95■□□□□ 0.94
VPS35-202ENST00000561713 LRWD1Q9UFC0 647 aa20.95■□□□□ 0.94
VPS35-202ENST00000561713 KIAA1024Q9UPX6 916 aa20.95■□□□□ 0.94
VPS35-202ENST00000561713 TRAPPC10P48553 1259 aa20.94■□□□□ 0.94
VPS35-202ENST00000561713 PTGDRQ13258 359 aa20.94■□□□□ 0.94
VPS35-202ENST00000561713 HTR4Q13639 388 aa20.94■□□□□ 0.94
VPS35-202ENST00000561713 USP41Q3LFD5 358 aa20.94■□□□□ 0.94
VPS35-202ENST00000561713 PRKD2Q9BZL6 878 aa20.94■□□□□ 0.94
VPS35-202ENST00000561713 C2orf40Q9H1Z8 148 aa20.94■□□□□ 0.94
VPS35-202ENST00000561713 SEMA4AQ9H3S1 761 aa20.94■□□□□ 0.94
VPS35-202ENST00000561713 ZDHHC7Q9NXF8 308 aa20.94■□□□□ 0.94
VPS35-202ENST00000561713 DLGAP2Q9P1A6 1054 aa20.94■□□□□ 0.94
VPS35-202ENST00000561713 SIT1Q9Y3P8 196 aa20.94■□□□□ 0.94
VPS35-202ENST00000561713 ANHXE9PGG2 379 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 PTGESO14684 152 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 N4BP3O15049 544 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 C1RP00736 705 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 U2AF2P26368 475 aaKnown RBP eCLIP20.93■□□□□ 0.94
VPS35-202ENST00000561713 CDC25AP30304 524 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 NAMPTP43490 491 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 IL17AQ16552 155 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 MAPK6Q16659 721 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 FAM187BQ17R55 369 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 PHLDB3Q6NSJ2 640 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 ARHGEF3Q9NR81 526 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP20.93■□□□□ 0.94
VPS35-202ENST00000561713 FNIP2Q9P278 1114 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 ADAM28Q9UKQ2 775 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 GDAQ9Y2T3 454 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 NUMBLQ9Y6R0 609 aa20.93■□□□□ 0.94
VPS35-202ENST00000561713 E9PMD0 336 aa20.92■□□□□ 0.94
VPS35-202ENST00000561713 KIF4AO95239 1232 aa20.92■□□□□ 0.94
VPS35-202ENST00000561713 HSP90AA2PQ14568 343 aaPredicted RBP20.92■□□□□ 0.94
VPS35-202ENST00000561713 GLRA4Q5JXX5 417 aa20.92■□□□□ 0.94
VPS35-202ENST00000561713 MCTP1Q6DN14 999 aa20.92■□□□□ 0.94
VPS35-202ENST00000561713 PRSS55Q6UWB4 352 aaPredicted RBP20.92■□□□□ 0.94
VPS35-202ENST00000561713 KCNK18Q7Z418 384 aa20.92■□□□□ 0.94
VPS35-202ENST00000561713 KIAA2013Q8IYS2 634 aa20.92■□□□□ 0.94
VPS35-202ENST00000561713 RMDN1Q96DB5 314 aa20.92■□□□□ 0.94
VPS35-202ENST00000561713 RPP25Q9BUL9 199 aaKnown RBP20.92■□□□□ 0.94
VPS35-202ENST00000561713 RUSC1Q9BVN2 902 aa20.92■□□□□ 0.94
VPS35-202ENST00000561713 ZMYM2Q9UBW7 1377 aa20.92■□□□□ 0.94
VPS35-202ENST00000561713 ZMYND10O75800 440 aa20.91■□□□□ 0.94
VPS35-202ENST00000561713 SP9P0CG40 484 aa20.91■□□□□ 0.94
VPS35-202ENST00000561713 TUSC3Q13454 348 aa20.91■□□□□ 0.94
VPS35-202ENST00000561713 RABEP1Q15276 862 aa20.91■□□□□ 0.94
VPS35-202ENST00000561713 ZRSR1Q15695 479 aaKnown RBP20.91■□□□□ 0.94
VPS35-202ENST00000561713 RTP2Q5QGT7 225 aa20.91■□□□□ 0.94
VPS35-202ENST00000561713 DCLRE1AQ6PJP8 1040 aa20.91■□□□□ 0.94
VPS35-202ENST00000561713 IGSF22Q8N9C0 903 aa20.91■□□□□ 0.94
VPS35-202ENST00000561713 FOXQ1Q9C009 403 aa20.91■□□□□ 0.94
VPS35-202ENST00000561713 SLC2A4RGQ9NR83 387 aa20.91■□□□□ 0.94
VPS35-202ENST00000561713 ACKR2O00590 384 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 TADA2AO75478 443 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 GLULP15104 373 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 FSHRP23945 695 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 PPP2R5AQ15172 486 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 NT5DC1Q5TFE4 455 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 C1orf210Q8IVY1 113 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 GPR65Q8IYL9 337 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 DAW1Q8N136 415 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 CEP120Q8N960 986 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 IFT74Q96LB3 600 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 ADPGKQ9BRR6 497 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 MYH15Q9Y2K3 1946 aa20.9■□□□□ 0.94
VPS35-202ENST00000561713 SF3B1O75533 1304 aaKnown RBP eCLIP20.89■□□□□ 0.93
VPS35-202ENST00000561713 HIP1RO75146 1068 aa20.89■□□□□ 0.93
VPS35-202ENST00000561713 LRRN2O75325 713 aa20.89■□□□□ 0.93
VPS35-202ENST00000561713 IGFBP6P24592 240 aaPredicted RBP20.89■□□□□ 0.93
VPS35-202ENST00000561713 GPC5P78333 572 aa20.89■□□□□ 0.93
VPS35-202ENST00000561713 NTHL1P78549 312 aa20.89■□□□□ 0.93
VPS35-202ENST00000561713 NAB2Q15742 525 aa20.89■□□□□ 0.93
VPS35-202ENST00000561713 ATF7IP2Q5U623 682 aa20.89■□□□□ 0.93
VPS35-202ENST00000561713 PARM1Q6UWI2 310 aa20.89■□□□□ 0.93
VPS35-202ENST00000561713 GRASPQ7Z6J2 395 aaPredicted RBP20.89■□□□□ 0.93
VPS35-202ENST00000561713 PJA1Q8NG27 643 aa20.89■□□□□ 0.93
VPS35-202ENST00000561713 FGF14Q92915 247 aa20.89■□□□□ 0.93
VPS35-202ENST00000561713 TMX3Q96JJ7 454 aa20.89■□□□□ 0.93
VPS35-202ENST00000561713 MMTAG2Q9BU76 263 aaKnown RBP20.89■□□□□ 0.93
VPS35-202ENST00000561713 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.89■□□□□ 0.93
VPS35-202ENST00000561713 PHLPP2Q6ZVD8 1323 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms