RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 EDEM3Q9BZQ6 932 aa6.98□□□□□ -1.29
SPG11-221ENST00000560299 IKZF4Q9H2S9 585 aa6.98□□□□□ -1.29
SPG11-221ENST00000560299 MMRN2Q9H8L6 949 aa6.98□□□□□ -1.29
SPG11-221ENST00000560299 MINDY3Q9H8M7 445 aa6.98□□□□□ -1.29
SPG11-221ENST00000560299 RPF1Q9H9Y2 349 aaKnown RBP6.98□□□□□ -1.29
SPG11-221ENST00000560299 PTPRHQ9HD43 1115 aa6.98□□□□□ -1.29
SPG11-221ENST00000560299 CHST12Q9NRB3 414 aa6.98□□□□□ -1.29
SPG11-221ENST00000560299 TRMT13Q9NUP7 481 aaKnown RBP6.98□□□□□ -1.29
SPG11-221ENST00000560299 TMEM39AQ9NV64 488 aa6.98□□□□□ -1.29
SPG11-221ENST00000560299 RBAKQ9NYW8 714 aaPredicted RBP6.98□□□□□ -1.29
SPG11-221ENST00000560299 DAAM1Q9Y4D1 1078 aa6.98□□□□□ -1.29
SPG11-221ENST00000560299 TRIOBPQ9H2D6 2365 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 LTBP2Q14767 1821 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 TMEM265A0A087WTH1 108 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 TISP43B9A030 160 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 PMM2O15305 246 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 B4GALT5O43286 388 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 B4GALT4O60513 344 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 BAIAP3O94812 1187 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 CTSHP09668 335 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 DLATP10515 647 aaKnown RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 HARSP12081 509 aaKnown RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 SKIP12755 728 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 TNNI1P19237 187 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 FMO5P49326 533 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 ACOT2P49753 483 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 MCCD1P59942 119 aaPredicted RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 MYL7Q01449 175 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 NFX1Q12986 1120 aaKnown RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 PAK2Q13177 524 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 PPIGQ13427 754 aaKnown RBP eCLIP6.97□□□□□ -1.29
SPG11-221ENST00000560299 SYCP1Q15431 976 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 AMHR2Q16671 573 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 TRIM71Q2Q1W2 868 aaKnown RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 FIGNQ5HY92 759 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 KRT39Q6A163 491 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 TWF2Q6IBS0 349 aaKnown RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 PSRC1Q6PGN9 363 aaPredicted RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 CACNA2D4Q7Z3S7 1137 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 CBWD2Q8IUF1 395 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 CNGA4Q8IV77 575 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 BRSK2Q8IWQ3 736 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 THNSL1Q8IYQ7 743 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 PARD3BQ8TEW8 1205 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 CACTINQ8WUQ7 758 aaKnown RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 CCDC127Q96BQ5 260 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 CPB2Q96IY4 423 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 FAM81BQ96LP2 452 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 ACAP3Q96P50 834 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 TSPAN18Q96SJ8 248 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 LBHD1Q9BQE6 289 aaPredicted RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 NUCKS1Q9H1E3 243 aaKnown RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 CDT1Q9H211 546 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 PDZD7Q9H5P4 517 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 ASB7Q9H672 318 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 PLEKHA5Q9HAU0 1116 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 CDHR5Q9HBB8 845 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 TMEM8AQ9HCN3 771 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 TOPORSQ9NS56 1045 aaPredicted RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 AGPAT5Q9NUQ2 364 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 ZNHIT6Q9NWK9 470 aaKnown RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 ST3GAL5Q9UNP4 418 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 PIN4Q9Y237 131 aaKnown RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 LUC7L2Q9Y383 392 aaKnown RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 R3HCC1Q9Y3T6 440 aaKnown RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.97□□□□□ -1.29
SPG11-221ENST00000560299 LAMA3Q16787 3333 aa6.97□□□□□ -1.29
SPG11-221ENST00000560299 TRIM43BA6NCK2 446 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 AKR1B15C9JRZ8 316 aaPredicted RBP6.96□□□□□ -1.3
SPG11-221ENST00000560299 PQBP1O60828 265 aaKnown RBP6.96□□□□□ -1.3
SPG11-221ENST00000560299 PHACTR2O75167 634 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 CSDE1O75534 798 aaKnown RBP6.96□□□□□ -1.3
SPG11-221ENST00000560299 NPTXRO95502 500 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 TNNC2P02585 160 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 CHRNA1P02708 482 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 ADRB2P07550 413 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 IQCF3P0C7M6 154 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 STAG3L1P0CL83 205 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 CKBP12277 381 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 RAG1P15918 1043 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 SELPP16109 830 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 FGFR4P22455 802 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 RFX1P22670 979 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 PBX1P40424 430 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 GRM5P41594 1212 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 MXI1P50539 228 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 RAB27AP51159 221 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 MGAT3Q09327 533 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 DUOXA2Q1HG44 320 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 FBXO47Q5MNV8 452 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 FAM109BQ6ICB4 259 aaPredicted RBP6.96□□□□□ -1.3
SPG11-221ENST00000560299 CRELD2Q6UXH1 353 aaPredicted RBP6.96□□□□□ -1.3
SPG11-221ENST00000560299 CCDC186Q7Z3E2 898 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 NT5DC4Q86YG4 428 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 WDR49Q8IV35 697 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 C7orf61Q8IZ16 206 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 TDHQ8IZJ6 230 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 ZNF687Q8N1G0 1237 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 CCDC112Q8NEF3 446 aa6.96□□□□□ -1.3
SPG11-221ENST00000560299 PHOSPHO2Q8TCD6 241 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms