RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 GPD1LQ8N335 351 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 TMEM130Q8N3G9 435 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 GOLGA5Q8TBA6 731 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 URGCPQ8TCY9 931 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 NOC3LQ8WTT2 800 aaKnown RBP23.71■■□□□ 1.39
SNX1-210ENST00000560260 FBXL18Q96ME1 805 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 RPS6KC1Q96S38 1066 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 C17orf80Q9BSJ5 609 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 MRPL9Q9BYD2 267 aaKnown RBP23.71■■□□□ 1.39
SNX1-210ENST00000560260 NRDE2Q9H7Z3 1164 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 CNTN3Q9P232 1028 aa23.71■■□□□ 1.39
SNX1-210ENST00000560260 CDH23Q9H251 3354 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 LACTBL1A8MY62 500 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 PBX3P40426 434 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 SPAG1Q07617 926 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 GRIK3Q13003 919 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 KYAT1Q16773 422 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 PPP2R2DQ66LE6 453 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 KLHL10Q6JEL2 608 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 SLC9A9Q8IVB4 645 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 BRSK2Q8IWQ3 736 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 CLP1Q92989 425 aaKnown RBP23.7■■□□□ 1.38
SNX1-210ENST00000560260 PPP1R10Q96QC0 940 aaKnown RBP23.7■■□□□ 1.38
SNX1-210ENST00000560260 RPF1Q9H9Y2 349 aaKnown RBP23.7■■□□□ 1.38
SNX1-210ENST00000560260 TOPORSQ9NS56 1045 aaPredicted RBP23.7■■□□□ 1.38
SNX1-210ENST00000560260 CACNG4Q9UBN1 327 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 DNAJB4Q9UDY4 337 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 CTNND2Q9UQB3 1225 aa23.7■■□□□ 1.38
SNX1-210ENST00000560260 SMIM28A0A1B0GU29 152 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 KIAA0391O15091 583 aaKnown RBP23.69■■□□□ 1.38
SNX1-210ENST00000560260 CALUO43852 315 aaPredicted RBP23.69■■□□□ 1.38
SNX1-210ENST00000560260 KCNE1P15382 129 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 CCNE1P24864 410 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 CASP4P49662 377 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 NLRP12P59046 1061 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 DSC1Q08554 894 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 NFIL3Q16649 462 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 ANKRD40Q6AI12 368 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 XXYLT1Q8NBI6 393 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 TMEM174Q8WUU8 243 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 RSPH1Q8WYR4 309 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 P2RX5Q93086 422 aa23.69■■□□□ 1.38
SNX1-210ENST00000560260 DHTKD1Q96HY7 919 aaPredicted RBP23.69■■□□□ 1.38
SNX1-210ENST00000560260 TTYH1Q9H313 450 aaPredicted RBP23.69■■□□□ 1.38
SNX1-210ENST00000560260 COL4A4P53420 1690 aaPredicted RBP23.69■■□□□ 1.38
SNX1-210ENST00000560260 SZT2Q5T011 3432 aa23.68■■□□□ 1.38
SNX1-210ENST00000560260 PSMA7O14818 248 aa23.68■■□□□ 1.38
SNX1-210ENST00000560260 LDHAP00338 332 aaKnown RBP23.68■■□□□ 1.38
SNX1-210ENST00000560260 SOX4Q06945 474 aaPredicted RBP23.68■■□□□ 1.38
SNX1-210ENST00000560260 NELFBQ8WX92 580 aa23.68■■□□□ 1.38
SNX1-210ENST00000560260 FAM84AQ96KN4 292 aa23.68■■□□□ 1.38
SNX1-210ENST00000560260 MED15Q96RN5 788 aa23.68■■□□□ 1.38
SNX1-210ENST00000560260 GZF1Q9H116 711 aaPredicted RBP23.68■■□□□ 1.38
SNX1-210ENST00000560260 CERS4Q9HA82 394 aa23.68■■□□□ 1.38
SNX1-210ENST00000560260 SLC28A3Q9HAS3 691 aa23.68■■□□□ 1.38
SNX1-210ENST00000560260 PLEKHA5Q9HAU0 1116 aa23.68■■□□□ 1.38
SNX1-210ENST00000560260 RBAKQ9NYW8 714 aaPredicted RBP23.68■■□□□ 1.38
SNX1-210ENST00000560260 KANSL3Q9P2N6 904 aa23.68■■□□□ 1.38
SNX1-210ENST00000560260 MTUS1Q9ULD2 1270 aa23.68■■□□□ 1.38
SNX1-210ENST00000560260 EPOPA6NHQ4 379 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 ZC3H11AO75152 810 aaKnown RBP eCLIP23.67■■□□□ 1.38
SNX1-210ENST00000560260 NFICP08651 508 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 NR2F2P24468 414 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 ERVK-21P61565 698 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 RNASELQ05823 741 aaKnown RBP23.67■■□□□ 1.38
SNX1-210ENST00000560260 PPP2R3AQ06190 1150 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 STIM1Q13586 685 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 SNRNP35Q16560 246 aaKnown RBP23.67■■□□□ 1.38
SNX1-210ENST00000560260 EDRF1Q3B7T1 1238 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 TTI2Q6NXR4 508 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 ZC3H3Q8IXZ2 948 aaKnown RBP23.67■■□□□ 1.38
SNX1-210ENST00000560260 EFCAB13Q8IY85 973 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 COLGALT2Q8IYK4 626 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 COLGALT1Q8NBJ5 622 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 PLEKHO2Q8TD55 490 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 C18orf25Q96B23 403 aaPredicted RBP23.67■■□□□ 1.38
SNX1-210ENST00000560260 FAM212AQ96EL1 285 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 TGS1Q96RS0 853 aaKnown RBP23.67■■□□□ 1.38
SNX1-210ENST00000560260 DUSP9Q99956 384 aaKnown RBP23.67■■□□□ 1.38
SNX1-210ENST00000560260 GOLGA2P5Q9HBQ8 144 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 TUBGCP4Q9UGJ1 667 aa23.67■■□□□ 1.38
SNX1-210ENST00000560260 EXOC3O60645 756 aa23.66■■□□□ 1.38
SNX1-210ENST00000560260 THP07101 528 aa23.66■■□□□ 1.38
SNX1-210ENST00000560260 PPP1R2P41236 205 aa23.66■■□□□ 1.38
SNX1-210ENST00000560260 SLC11A1P49279 550 aa23.66■■□□□ 1.38
SNX1-210ENST00000560260 FXR1P51114 621 aaKnown RBP eCLIP23.66■■□□□ 1.38
SNX1-210ENST00000560260 STX17P56962 302 aa23.66■■□□□ 1.38
SNX1-210ENST00000560260 POU5F1Q01860 360 aaKnown RBP23.66■■□□□ 1.38
SNX1-210ENST00000560260 MYBPC2Q14324 1141 aa23.66■■□□□ 1.38
SNX1-210ENST00000560260 JADE1Q6IE81 842 aa23.66■■□□□ 1.38
SNX1-210ENST00000560260 TMEM173Q86WV6 379 aaPredicted RBP23.66■■□□□ 1.38
SNX1-210ENST00000560260 RDH13Q8NBN7 331 aa23.66■■□□□ 1.38
SNX1-210ENST00000560260 BCL7CQ8WUZ0 217 aaPredicted RBP23.66■■□□□ 1.38
SNX1-210ENST00000560260 EEF2KMTQ96G04 330 aa23.66■■□□□ 1.38
SNX1-210ENST00000560260 PAAF1Q9BRP4 392 aa23.66■■□□□ 1.38
SNX1-210ENST00000560260 ZNF233A6NK53 670 aa23.65■■□□□ 1.38
SNX1-210ENST00000560260 F8W810 466 aa23.65■■□□□ 1.38
SNX1-210ENST00000560260 LAG3P18627 525 aa23.65■■□□□ 1.38
SNX1-210ENST00000560260 CTNNB1P35222 781 aa23.65■■□□□ 1.38
SNX1-210ENST00000560260 GUCY2FP51841 1108 aa23.65■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms