RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 NR2F2P24468 414 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 ACOT2P49753 483 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 GATMP50440 423 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 NLRP12P59046 1061 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 TUSC3Q13454 348 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 NFKBIBQ15653 356 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 SNRNP35Q16560 246 aaKnown RBP10.95□□□□□ -0.66
USP3-216ENST00000559873 ZNF697Q5TEC3 545 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 CENPPQ6IPU0 288 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 KLHL10Q6JEL2 608 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 NELFBQ8WX92 580 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 ZFP42Q96MM3 310 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 UROC1Q96N76 676 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 ZNF558Q96NG5 402 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 TGS1Q96RS0 853 aaKnown RBP10.95□□□□□ -0.66
USP3-216ENST00000559873 TMEM175Q9BSA9 504 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 PLVAPQ9BX97 442 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 HAPLN2Q9GZV7 340 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 IKZF4Q9H2S9 585 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 NKX2-4Q9H2Z4 354 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 ASB7Q9H672 318 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 KLK14Q9P0G3 267 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 TMEM63CQ9P1W3 806 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 UBQLN1Q9UMX0 589 aaKnown RBP10.95□□□□□ -0.66
USP3-216ENST00000559873 CTNND2Q9UQB3 1225 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 DERAQ9Y315 318 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 PCDHB12Q9Y5F1 795 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 MRPL42Q9Y6G3 142 aaKnown RBP10.95□□□□□ -0.66
USP3-216ENST00000559873 RALGAPA2Q2PPJ7 1873 aa10.95□□□□□ -0.66
USP3-216ENST00000559873 TTC26A0AVF1 554 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 LCHNA4D1U4 455 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 LINC01553A4QN01 128 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 GOLGA8IPA6NC78 632 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 GOLGA8JA6NMD2 632 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 MAPK13O15264 365 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 SLC16A3O15427 465 aaKnown RBP10.94□□□□□ -0.66
USP3-216ENST00000559873 ZC3H11AO75152 810 aaKnown RBP eCLIP10.94□□□□□ -0.66
USP3-216ENST00000559873 EPB41P11171 864 aaKnown RBP10.94□□□□□ -0.66
USP3-216ENST00000559873 KRT13P13646 458 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 CTNNB1P35222 781 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 PBX2P40425 430 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 TNFSF9P41273 254 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 ALDH7A1P49419 539 aaKnown RBP10.94□□□□□ -0.66
USP3-216ENST00000559873 FKBP3Q00688 224 aaKnown RBP10.94□□□□□ -0.66
USP3-216ENST00000559873 ADAM9Q13443 819 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 TMEM132DQ14C87 1099 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 ENOX2Q16206 610 aaKnown RBP10.94□□□□□ -0.66
USP3-216ENST00000559873 ZCWPW2Q504Y3 356 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 SEZ6Q53EL9 994 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 XKR4Q5GH76 650 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 HABP4Q5JVS0 413 aaKnown RBP10.94□□□□□ -0.66
USP3-216ENST00000559873 GLRA4Q5JXX5 417 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 CEP135Q66GS9 1140 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 GPR153Q6NV75 609 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 CACTINQ8WUQ7 758 aaKnown RBP10.94□□□□□ -0.66
USP3-216ENST00000559873 CLP1Q92989 425 aaKnown RBP10.94□□□□□ -0.66
USP3-216ENST00000559873 FAM212AQ96EL1 285 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 KIF12Q96FN5 646 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 FBXL18Q96ME1 805 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 FNBP1Q96RU3 617 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 C11orf84Q9BUA3 381 aaPredicted RBP10.94□□□□□ -0.66
USP3-216ENST00000559873 MKNK1Q9BUB5 465 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 NAT10Q9H0A0 1025 aaKnown RBP10.94□□□□□ -0.66
USP3-216ENST00000559873 STK39Q9UEW8 545 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 RWDD2AQ9UIY3 292 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 YBX2Q9Y2T7 364 aaKnown RBP10.94□□□□□ -0.66
USP3-216ENST00000559873 C2CD2Q9Y426 696 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 CITO14578 2027 aa10.94□□□□□ -0.66
USP3-216ENST00000559873 FNDC1Q4ZHG4 1894 aaPredicted RBP10.93□□□□□ -0.66
USP3-216ENST00000559873 SMIM28A0A1B0GU29 152 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 PPP1R3GB7ZBB8 358 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 TULP1O00294 542 aaPredicted RBP10.93□□□□□ -0.66
USP3-216ENST00000559873 PTGESO14684 152 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 RB1P06400 928 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 CCDC192P0DO97 292 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 MYOGP15173 224 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 CYP3A5P20815 502 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 BMP6P22004 513 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 ERCC5P28715 1186 aaPredicted RBP10.93□□□□□ -0.66
USP3-216ENST00000559873 PSMC2P35998 433 aaKnown RBP10.93□□□□□ -0.66
USP3-216ENST00000559873 TPD52L1Q16890 204 aaPredicted RBP10.93□□□□□ -0.66
USP3-216ENST00000559873 SLC10A6Q3KNW5 377 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 DPCR1Q3MIW9 517 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 ZBTB41Q5SVQ8 909 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 INTS8Q75QN2 995 aaKnown RBP10.93□□□□□ -0.66
USP3-216ENST00000559873 CBWD2Q8IUF1 395 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 TMEM192Q8IY95 271 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 FAM186BQ8IYM0 893 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 CSGALNACT2Q8N6G5 542 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 BEST2Q8NFU1 509 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 TMEM169Q96HH4 297 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 CEP63Q96MT8 703 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 SEMA6BQ9H3T3 888 aa10.93□□□□□ -0.66
USP3-216ENST00000559873 R3HCC1Q9Y3T6 440 aaKnown RBP10.93□□□□□ -0.66
USP3-216ENST00000559873 GBF1Q92538 1859 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 TRIM49BA6NDI0 452 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 LACTBL1A8MY62 500 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 RBAK-RBAKDNI3L0D1 243 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 STX10O60499 249 aa10.92□□□□□ -0.66
USP3-216ENST00000559873 GNA14O95837 355 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms