RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 HACE1Q8IYU2 909 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 LPPQ93052 612 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 CNOT6LQ96LI5 555 aaKnown RBP10.45□□□□□ -0.74
CUX1-216ENST00000558469 MFSD14AQ96MC6 490 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 HSD3B7Q9H2F3 369 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 RPF1Q9H9Y2 349 aaKnown RBP10.45□□□□□ -0.74
CUX1-216ENST00000558469 C1orf112Q9NSG2 853 aa10.45□□□□□ -0.74
CUX1-216ENST00000558469 RBAKQ9NYW8 714 aaPredicted RBP10.45□□□□□ -0.74
CUX1-216ENST00000558469 MAGEC2Q9UBF1 373 aaPredicted RBP10.45□□□□□ -0.74
CUX1-216ENST00000558469 ABHD14A-ACY1A0A1B0GW23 586 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.44□□□□□ -0.74
CUX1-216ENST00000558469 MEIS3P2A8K0S8 358 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 LACTBL1A8MY62 500 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 KCNJ18B7U540 433 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 MAPK13O15264 365 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 ZNF623O75123 536 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 RECQL4O94761 1208 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 EOMESO95936 686 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 CXCL8P10145 99 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 KRT13P13646 458 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 ATF7P17544 494 aaPredicted RBP10.44□□□□□ -0.74
CUX1-216ENST00000558469 MTIF2P46199 727 aaKnown RBP10.44□□□□□ -0.74
CUX1-216ENST00000558469 EPHB4P54760 987 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 FAM189BP81408 668 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 KCNJ12Q14500 433 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 SLC10A6Q3KNW5 377 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 TCP11X2Q5H9J9 407 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 TMEM240Q5SV17 173 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.44□□□□□ -0.741e-8■■■■□ 26.3
CUX1-216ENST00000558469 AGMOQ6ZNB7 445 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 ZNF365Q70YC5 407 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 FRMD5Q7Z6J6 570 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 CCDC127Q96BQ5 260 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 PGBD4Q96DM1 585 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 MKNK1Q9BUB5 465 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 METTL14Q9HCE5 456 aaKnown RBP10.44□□□□□ -0.74
CUX1-216ENST00000558469 PDE11AQ9HCR9 933 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 KLK14Q9P0G3 267 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 ARMCX3Q9UH62 379 aaPredicted RBP10.44□□□□□ -0.74
CUX1-216ENST00000558469 LRFN2Q9ULH4 789 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 PCDHB7Q9Y5E2 793 aa10.44□□□□□ -0.74
CUX1-216ENST00000558469 TTC26A0AVF1 554 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 ZBBXA8MT70 800 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 MEFVO15553 781 aaPredicted RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 EFCAB14O75071 495 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 BAIAP3O94812 1187 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 UPP2O95045 317 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 IL18RAPO95256 599 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 DLATP10515 647 aaKnown RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 ATP1A3P13637 1013 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 ZNF18P17022 549 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 EEF1GP26641 437 aaKnown RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 MAGEA10P43363 369 aaPredicted RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 VAMP7P51809 220 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 MARSP56192 900 aaKnown RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 WNT7BP56706 349 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 DLG4P78352 724 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 PPP2R3AQ06190 1150 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 BFSP1Q12934 665 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 PSMD6Q15008 389 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 TCERG1LQ5VWI1 586 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 PSRC1Q6PGN9 363 aaPredicted RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 INTS8Q75QN2 995 aaKnown RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 ZNF598Q86UK7 904 aaKnown RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 BRSK2Q8IWQ3 736 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 PLEKHO2Q8TD55 490 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 PARD3BQ8TEW8 1205 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 RNF25Q96BH1 459 aaPredicted RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 BORCS6Q96GS4 357 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 SNX27Q96L92 541 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 FNBP1Q96RU3 617 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 POP1Q99575 1024 aaKnown RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.43□□□□□ -0.745e-7■□□□□ 11.3
CUX1-216ENST00000558469 CXCL16Q9H2A7 254 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 ELAC1Q9H777 363 aaKnown RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 RSAD1Q9HA92 442 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 UBN1Q9NPG3 1134 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 TOPORSQ9NS56 1045 aaPredicted RBP10.43□□□□□ -0.74
CUX1-216ENST00000558469 RNF19AQ9NV58 838 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 TMEM161AQ9NX61 479 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 CEP290O15078 2479 aa10.43□□□□□ -0.74
CUX1-216ENST00000558469 KIAA1671Q9BY89 1806 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 ARL5CA6NH57 179 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 AMHP03971 560 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 TRIM49P0CI25 452 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 TRIM49CP0CI26 452 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 FGFR1P11362 822 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 PRKCSHP14314 528 aaPredicted RBP10.42□□□□□ -0.74
CUX1-216ENST00000558469 TNNI1P19237 187 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 MLH1P40692 756 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 KCNJ6P48051 423 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 RGS19P49795 217 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 WDR5P61964 334 aaKnown RBP10.42□□□□□ -0.74
CUX1-216ENST00000558469 DEFB103AP81534 67 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 POU5F1Q01860 360 aaKnown RBP10.42□□□□□ -0.74
CUX1-216ENST00000558469 SPAG1Q07617 926 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 KRT31Q15323 416 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 SURF1Q15526 300 aa10.42□□□□□ -0.74
CUX1-216ENST00000558469 DCAF17Q5H9S7 520 aaPredicted RBP10.42□□□□□ -0.74
CUX1-216ENST00000558469 LMBRD2Q68DH5 695 aaPredicted RBP10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms