RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 RIPOR3Q96MK2 946 aa9.47□□□□□ -0.89
USP3-208ENST00000558285 PPP1R9BQ96SB3 815 aa9.47□□□□□ -0.89
USP3-208ENST00000558285 ACO2Q99798 780 aaKnown RBP9.47□□□□□ -0.89
USP3-208ENST00000558285 REEP2Q9BRK0 252 aa9.47□□□□□ -0.89
USP3-208ENST00000558285 ANKFY1Q9P2R3 1169 aa9.47□□□□□ -0.89
USP3-208ENST00000558285 GDAQ9Y2T3 454 aa9.47□□□□□ -0.89
USP3-208ENST00000558285 PRRC2BQ5JSZ5 2229 aaKnown RBP9.46□□□□□ -0.89
USP3-208ENST00000558285 GOLGA6L4A6NEF3 574 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 NRP1O14786 923 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 KIAA0391O15091 583 aaKnown RBP9.46□□□□□ -0.89
USP3-208ENST00000558285 BRD1O95696 1058 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 CLTAP09496 248 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 IDEP14735 1019 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 AKAP5P24588 427 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 KLRC2P26717 231 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 SSTR3P32745 418 aaPredicted RBP9.46□□□□□ -0.89
USP3-208ENST00000558285 RPL9P32969 192 aaKnown RBP9.46□□□□□ -0.89
USP3-208ENST00000558285 SLC11A1P49279 550 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 ZNF131P52739 623 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 NCKAP1LP55160 1127 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 POU5F1Q01860 360 aaKnown RBP9.46□□□□□ -0.89
USP3-208ENST00000558285 ITIH3Q06033 890 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 PPP2R3AQ06190 1150 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 DSC1Q08554 894 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 COASYQ13057 564 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 MCM6Q14566 821 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 CTC1Q2NKJ3 1217 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 RBM23Q86U06 439 aaKnown RBP9.46□□□□□ -0.89
USP3-208ENST00000558285 COLGALT2Q8IYK4 626 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 SYCP3Q8IZU3 236 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 TMEM161BQ8NDZ6 487 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 KIFC3Q9BVG8 833 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 HERC2P3Q9BVR0 1158 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 ZBP1Q9H171 429 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 ST6GALNAC4Q9H4F1 302 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 TMEM206Q9H813 350 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 MRPL44Q9H9J2 332 aaKnown RBP9.46□□□□□ -0.89
USP3-208ENST00000558285 SNTG2Q9NY99 539 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 CHMP5Q9NZZ3 219 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 ADAM28Q9UKQ2 775 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 TBX20Q9UMR3 447 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 PRG3Q9Y2Y8 225 aaPredicted RBP9.46□□□□□ -0.89
USP3-208ENST00000558285 R3HCC1Q9Y3T6 440 aaKnown RBP9.46□□□□□ -0.89
USP3-208ENST00000558285 HES2Q9Y543 173 aa9.46□□□□□ -0.89
USP3-208ENST00000558285 GRXCR2A6NFK2 248 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 SFI1A8K8P3 1242 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 LDHAP00338 332 aaKnown RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 DCLRE1AQ6PJP8 1040 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 CYP26C1Q6V0L0 522 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 TMEM184AQ6ZMB5 413 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 KCNK18Q7Z418 384 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 DAW1Q8N136 415 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 ANP32BQ92688 251 aaKnown RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 EPSTI1Q96J88 318 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 SPATA32Q96LK8 384 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 ACCSQ96QU6 501 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 TARS2Q9BW92 718 aaKnown RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 OXCT2Q9BYC2 517 aaPredicted RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 RPF1Q9H9Y2 349 aaKnown RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 KLK14Q9P0G3 267 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 NR2E1Q9Y466 385 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 NUB1Q9Y5A7 615 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 LAMA3Q16787 3333 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 FNDC1Q4ZHG4 1894 aaPredicted RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 C2orf71A6NGG8 1288 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 NT5C1B-RDH14C9J2C7 533 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 H3BQ06 376 aaPredicted RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 LETM1O95202 739 aaPredicted RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 MYL1P05976 194 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 HARSP12081 509 aaKnown RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 BMP1P13497 986 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 ALADP13716 330 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 MTHFRP42898 656 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 ERVFC1P60507 584 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 TFF2Q03403 129 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 MCL1Q07820 350 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 MAPK7Q13164 816 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 HERC4Q5GLZ8 1057 aaPredicted RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 NT5DC1Q5TFE4 455 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 ZBTB33Q86T24 672 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 CDR2LQ86X02 465 aaPredicted RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 ZNF280BQ86YH2 543 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 IPO4Q8TEX9 1081 aaKnown RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 HDAC7Q8WUI4 952 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 DDX12PQ92771 950 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 ZFP42Q96MM3 310 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 MSTO1Q9BUK6 570 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 C1QTNF1Q9BXJ1 281 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 COL25A1Q9BXS0 654 aaPredicted RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 MFRPQ9BY79 579 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 CDT1Q9H211 546 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 PRDM6Q9NQX0 595 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 OLFML3Q9NRN5 406 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 BLOC1S4Q9NUP1 217 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 TFIP11Q9UBB9 837 aaKnown RBP9.45□□□□□ -0.9
USP3-208ENST00000558285 DNAJB4Q9UDY4 337 aa9.45□□□□□ -0.9
USP3-208ENST00000558285 TMEM189-UBE2V1I3L0A0 370 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 OGTO15294 1046 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 DDHD2O94830 711 aa9.44□□□□□ -0.9
USP3-208ENST00000558285 GLUD1P00367 558 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms