RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 ORC4O43929 436 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 AKR1B10O60218 316 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 LPLP06858 475 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 ECHS1P30084 290 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 CACNA2D1P54289 1103 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 SIM1P81133 766 aaPredicted RBP3.88□□□□□ -1.79
VPS13C-205ENST00000558088 NHLH1Q02575 133 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 UGT8Q16880 541 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 MST1LQ2TV78 715 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 PITRM1Q5JRX3 1037 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 BROXQ5VW32 411 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 PAPD7Q5XG87 772 aaKnown RBP3.88□□□□□ -1.79
VPS13C-205ENST00000558088 C16orf86Q6ZW13 317 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 GPR149Q86SP6 731 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 RASSF3Q86WH2 238 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 THNSL2Q86YJ6 484 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 LYSMD2Q8IV50 215 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 NIM1KQ8IY84 436 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 FAM98AQ8NCA5 519 aaKnown RBP3.88□□□□□ -1.79
VPS13C-205ENST00000558088 ACTRT2Q8TDY3 377 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 SREK1Q8WXA9 508 aaKnown RBP3.88□□□□□ -1.79
VPS13C-205ENST00000558088 SMG7Q92540 1137 aaKnown RBP3.88□□□□□ -1.79
VPS13C-205ENST00000558088 APPBP2Q92624 585 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 UHRF1Q96T88 793 aaPredicted RBP3.88□□□□□ -1.79
VPS13C-205ENST00000558088 NEU1Q99519 415 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 MOCS1Q9NZB8 636 aa3.88□□□□□ -1.79
VPS13C-205ENST00000558088 A0A1B0GTW7 788 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 ADCYAP1R1P41586 468 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 RARRES1P49788 294 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 PER3P56645 1201 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 CXADRP78310 365 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 PCBP1Q15365 356 aaKnown RBP eCLIP3.87□□□□□ -1.79
VPS13C-205ENST00000558088 ATP13A4Q4VNC1 1196 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 METRNLQ641Q3 311 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 ZNF572Q7Z3I7 529 aaPredicted RBP3.87□□□□□ -1.79
VPS13C-205ENST00000558088 SLC41A1Q8IVJ1 513 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 COLGALT2Q8IYK4 626 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 OR7D4Q8NG98 312 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 SLC35B2Q8TB61 432 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 BOD1Q96IK1 185 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 RAX2Q96IS3 184 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 ACAP3Q96P50 834 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 AIFM2Q9BRQ8 373 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 SLC29A3Q9BZD2 475 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 BCO1Q9HAY6 547 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 EMC7Q9NPA0 242 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 SEMA4GQ9NTN9 838 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 SLC17A6Q9P2U8 582 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 KCNE5Q9UJ90 142 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 ZBTB21Q9ULJ3 1066 aa3.87□□□□□ -1.79
VPS13C-205ENST00000558088 MTO1Q9Y2Z2 717 aaKnown RBP3.87□□□□□ -1.79
VPS13C-205ENST00000558088 ADCY6O43306 1168 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 ERN1O75460 977 aaKnown RBP3.86□□□□□ -1.79
VPS13C-205ENST00000558088 GPANK1O95872 356 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 POMCP01189 267 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 RAP2AP10114 183 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 IL2RBP14784 551 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 ITGB6P18564 788 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 ATP5JP18859 108 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 ADSLP30566 484 aaPredicted RBP3.86□□□□□ -1.79
VPS13C-205ENST00000558088 ABCG1P45844 678 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 OCA2Q04671 838 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 SP140Q13342 867 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 CPEB4Q17RY0 729 aaKnown RBP eCLIP3.86□□□□□ -1.79
VPS13C-205ENST00000558088 CT83Q5H943 113 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 AKNAD1Q5T1N1 836 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 MICALCLQ6ZW33 695 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 DHX37Q8IY37 1157 aaKnown RBP3.86□□□□□ -1.79
VPS13C-205ENST00000558088 TRMT2AQ8IZ69 625 aaKnown RBP3.86□□□□□ -1.79
VPS13C-205ENST00000558088 REPS2Q8NFH8 660 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 PTCD3Q96EY7 689 aaKnown RBP3.86□□□□□ -1.79
VPS13C-205ENST00000558088 ZSWIM1Q9BR11 485 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 MRI1Q9BV20 369 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 TARS2Q9BW92 718 aaKnown RBP3.86□□□□□ -1.79
VPS13C-205ENST00000558088 KMT5AQ9NQR1 393 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 PLAAQ9Y263 795 aa3.86□□□□□ -1.79
VPS13C-205ENST00000558088 PROP1O75360 226 aa3.85□□□□□ -1.79
VPS13C-205ENST00000558088 ALOX15P16050 662 aaPredicted RBP3.85□□□□□ -1.79
VPS13C-205ENST00000558088 FGFR4P22455 802 aa3.85□□□□□ -1.79
VPS13C-205ENST00000558088 SCAPQ12770 1279 aa3.85□□□□□ -1.79
VPS13C-205ENST00000558088 SEPT7Q16181 437 aaKnown RBP3.85□□□□□ -1.79
VPS13C-205ENST00000558088 FSCN1Q16658 493 aaKnown RBP3.85□□□□□ -1.79
VPS13C-205ENST00000558088 B3GNTL1Q67FW5 361 aaPredicted RBP3.85□□□□□ -1.79
VPS13C-205ENST00000558088 SRRM1Q8IYB3 904 aaKnown RBP3.85□□□□□ -1.79
VPS13C-205ENST00000558088 GPR156Q8NFN8 814 aa3.85□□□□□ -1.79
VPS13C-205ENST00000558088 RIN2Q8WYP3 895 aaPredicted RBP3.85□□□□□ -1.79
VPS13C-205ENST00000558088 USP7Q93009 1102 aa3.85□□□□□ -1.79
VPS13C-205ENST00000558088 FUBP1Q96AE4 644 aaKnown RBP3.85□□□□□ -1.79
VPS13C-205ENST00000558088 EAF2Q96CJ1 260 aaPredicted RBP3.85□□□□□ -1.79
VPS13C-205ENST00000558088 MFSD3Q96ES6 412 aa3.85□□□□□ -1.79
VPS13C-205ENST00000558088 SENP6Q9GZR1 1112 aaPredicted RBP3.85□□□□□ -1.79
VPS13C-205ENST00000558088 TMEM74BQ9NUR3 256 aa3.85□□□□□ -1.79
VPS13C-205ENST00000558088 RNF7Q9UBF6 113 aa3.85□□□□□ -1.79
VPS13C-205ENST00000558088 DPP7Q9UHL4 492 aa3.85□□□□□ -1.79
VPS13C-205ENST00000558088 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.84□□□□□ -1.79
VPS13C-205ENST00000558088 FAM83GA6ND36 823 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 KRTAP29-1A8MX34 341 aaPredicted RBP3.84□□□□□ -1.79
VPS13C-205ENST00000558088 TEX33O43247 280 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 PEX1O43933 1283 aa3.84□□□□□ -1.79
VPS13C-205ENST00000558088 RBMXL2O75526 392 aaKnown RBP3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms