RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 IFI44Q8TCB0 444 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 UBE2Q2Q8WVN8 375 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 GCC1Q96CN9 775 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 ZC3H10Q96K80 434 aaKnown RBP3.77□□□□□ -1.81
TRAV28-201ENST00000557548 FAM167AQ96KS9 214 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 PPP1R16BQ96T49 567 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 UHRF1Q96T88 793 aaPredicted RBP3.77□□□□□ -1.81
TRAV28-201ENST00000557548 LDAHQ9H6V9 325 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 MANSC1Q9H8J5 431 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 SARS2Q9NP81 518 aaKnown RBP3.77□□□□□ -1.81
TRAV28-201ENST00000557548 DLL4Q9NR61 685 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 CNNM1Q9NRU3 951 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 STK32BQ9NY57 414 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 SWAP70Q9UH65 585 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 ZFP69BQ9UJL9 534 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 ADAMTS6Q9UKP5 1117 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 CEP83Q9Y592 693 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 PCDHA1Q9Y5I3 950 aa3.77□□□□□ -1.81
TRAV28-201ENST00000557548 A0A1W2PPC4 97 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 PRRT4C9JH25 899 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 FFAR2O15552 330 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 MAFO75444 373 aaPredicted RBP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 ARIH2O95376 493 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 PRNPP04156 253 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 C8BP07358 591 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 COL6A1P12109 1028 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 HSD3B1P14060 373 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 HNRNPLP14866 589 aaKnown RBP eCLIP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 SMARCA1P28370 1054 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 PDIA3P30101 505 aaKnown RBP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 PER3P56645 1201 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 GEMIN4P57678 1058 aaKnown RBP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 TLE1Q04724 770 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 RAB39AQ14964 217 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 UBE3CQ15386 1083 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 WDR72Q3MJ13 1102 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 ARL13BQ3SXY8 428 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 FLYWCH1Q4VC44 716 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 C3orf38Q5JPI3 329 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 KHDC1LQ5JSQ8 128 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 GRAMD4Q6IC98 578 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 PGBD2Q6P3X8 592 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 LCNL1Q6ZST4 164 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 VSIG10LQ86VR7 867 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 PPP1R3BQ86XI6 285 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 PQLC1Q8N2U9 271 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 TXLNBQ8N3L3 684 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 MSL3Q8N5Y2 521 aaKnown RBP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 STPG3Q8N7X2 389 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 PIK3C3Q8NEB9 887 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 FBXO18Q8NFZ0 1043 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 BRIX1Q8TDN6 353 aaKnown RBP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 SNX33Q8WV41 574 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 BRI3BPQ8WY22 251 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 TBC1D20Q96BZ9 403 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 LTV1Q96GA3 475 aaPredicted RBP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 MPP4Q96JB8 637 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 MRGPRX1Q96LB2 322 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 ZSWIM3Q96MP5 696 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 SYT3Q9BQG1 590 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 TMPRSS5Q9H3S3 457 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 EPB41L4AQ9HCS5 686 aaPredicted RBP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 SACM1LQ9NTJ5 587 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 GJB4Q9NTQ9 266 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 KLHL14Q9P2G3 628 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 GRHPRQ9UBQ7 328 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 CCDC39Q9UFE4 941 aa3.76□□□□□ -1.81
TRAV28-201ENST00000557548 AFF4Q9UHB7 1163 aaKnown RBP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 ANGEL1Q9UNK9 670 aaKnown RBP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 YBX2Q9Y2T7 364 aaKnown RBP3.76□□□□□ -1.81
TRAV28-201ENST00000557548 MYBBP1AQ9BQG0 1328 aaKnown RBP3.75□□□□□ -1.81
TRAV28-201ENST00000557548 H0Y858 1186 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 ADCY6O43306 1168 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 PHF2O75151 1096 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 SKAP2O75563 359 aaPredicted RBP3.75□□□□□ -1.81
TRAV28-201ENST00000557548 AHSGP02765 367 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 AMY1AP04745 511 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 FAM163BP0C2L3 166 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 GAAP10253 952 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 EN2P19622 333 aaPredicted RBP3.75□□□□□ -1.81
TRAV28-201ENST00000557548 EEF1GP26641 437 aaKnown RBP3.75□□□□□ -1.81
TRAV28-201ENST00000557548 ALDH9A1P49189 494 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 CTSWP56202 376 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 ZNF200P98182 395 aaPredicted RBP3.75□□□□□ -1.81
TRAV28-201ENST00000557548 GALNT1Q10472 559 aaPredicted RBP3.75□□□□□ -1.81
TRAV28-201ENST00000557548 PPFIA1Q13136 1202 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 PLCL1Q15111 1095 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 FKBP15Q5T1M5 1219 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 NFXL1Q6ZNB6 911 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 PDZD4Q76G19 769 aaPredicted RBP3.75□□□□□ -1.81
TRAV28-201ENST00000557548 OTOP2Q7RTS6 562 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 UNC5BQ8IZJ1 945 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 CACNA2D3Q8IZS8 1091 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 BCL6BQ8N143 479 aaPredicted RBP3.75□□□□□ -1.81
TRAV28-201ENST00000557548 ATG16L2Q8NAA4 619 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 PPHLN1Q8NEY8 458 aaKnown RBP3.75□□□□□ -1.81
TRAV28-201ENST00000557548 BHLHE22Q8NFJ8 381 aaPredicted RBP3.75□□□□□ -1.81
TRAV28-201ENST00000557548 ABHD4Q8TB40 342 aa3.75□□□□□ -1.81
TRAV28-201ENST00000557548 ZNF480Q8WV37 535 aa3.75□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms