RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 CSF1RP07333 972 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 TXNP10599 105 aaKnown RBP11.31□□□□□ -0.6
ACTN1-216ENST00000556083 MARK3P27448 753 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 TYK2P29597 1187 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 ETFBP38117 255 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 ANXA11P50995 505 aaKnown RBP11.31□□□□□ -0.6
ACTN1-216ENST00000556083 CLCN6P51797 869 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 NPEPPSP55786 919 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 PDE1CQ14123 709 aaPredicted RBP11.31□□□□□ -0.6
ACTN1-216ENST00000556083 HLFQ16534 295 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 CDO1Q16878 200 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 CCDC144BQ3MJ40 725 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 POTEAQ6S8J7 498 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 PI16Q6UXB8 463 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 LINC00523Q86TU6 105 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 DAGLBQ8NCG7 672 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 NSUN4Q96CB9 384 aaKnown RBP11.31□□□□□ -0.6
ACTN1-216ENST00000556083 NAF1Q96HR8 494 aaKnown RBP11.31□□□□□ -0.6
ACTN1-216ENST00000556083 NAT9Q9BTE0 207 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 POTEB3A0JP26 581 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 POTECB2RU33 542 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 IGF2BP3O00425 579 aaKnown RBP eCLIP11.31□□□□□ -0.61e-11■■■■□ 20.1
ACTN1-216ENST00000556083 GTF2H1P32780 548 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 TPI1P60174 286 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 RARS2Q5T160 578 aaKnown RBP11.31□□□□□ -0.6
ACTN1-216ENST00000556083 POTEBQ6S5H4 581 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 DTX3LQ8TDB6 740 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 TRIM9Q9C026 710 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 XAB2Q9HCS7 855 aaKnown RBP11.31□□□□□ -0.6
ACTN1-216ENST00000556083 ABCB6Q9NP58 842 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 ABCF3Q9NUQ8 709 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 ZFATQ9P243 1243 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 NEXMIFQ5QGS0 1516 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 KRT8P05787 483 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 PPP4CP60510 307 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 EXOSC10Q01780 885 aaKnown RBP11.31□□□□□ -0.6
ACTN1-216ENST00000556083 HIF1AQ16665 826 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 AASDHQ4L235 1098 aaPredicted RBP11.31□□□□□ -0.6
ACTN1-216ENST00000556083 GLB1LQ6UWU2 654 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 C16orf86Q6ZW13 317 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 GRAMD1CQ8IYS0 662 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 ZNF34Q8IZ26 560 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 DCLK2Q8N568 766 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 BANK1Q8NDB2 785 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 TTC17Q96AE7 1141 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 SPATA16Q9BXB7 569 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 RPAP3Q9H6T3 665 aaPredicted RBP11.31□□□□□ -0.6
ACTN1-216ENST00000556083 FAM217BQ9NTX9 383 aaPredicted RBP11.31□□□□□ -0.6
ACTN1-216ENST00000556083 NMRK1Q9NWW6 199 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 HACD3Q9P035 362 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 RNF181Q9P0P0 153 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 SNX24Q9Y343 169 aa11.31□□□□□ -0.6
ACTN1-216ENST00000556083 TADA3O75528 432 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 ACSL3O95573 720 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 SERPINB10P48595 397 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 DYNC1I2Q13409 638 aaKnown RBP11.3□□□□□ -0.6
ACTN1-216ENST00000556083 PTK6Q13882 451 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 USP17L6PQ6QN14 398 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 OR6J1Q8NGC5 347 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 PBXIP1Q96AQ6 731 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 EGFL8Q99944 293 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 VPS11Q9H270 941 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 CDV3Q9UKY7 258 aaKnown RBP11.3□□□□□ -0.6
ACTN1-216ENST00000556083 ALKQ9UM73 1620 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 CPT1AP50416 773 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 FXR2P51116 673 aaKnown RBP eCLIP11.3□□□□□ -0.61e-6■■■■□ 21.1
ACTN1-216ENST00000556083 BOLA3Q53S33 107 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 CCDC137Q6PK04 289 aaKnown RBP11.3□□□□□ -0.6
ACTN1-216ENST00000556083 PCYOX1LQ8NBM8 494 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 TEKT4Q8WW24 435 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 CELF1Q92879 486 aaKnown RBP11.3□□□□□ -0.6
ACTN1-216ENST00000556083 ARHGEF26Q96DR7 871 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 ATP6V1G3Q96LB4 118 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 ERAP1Q9NZ08 941 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 SYCE1LA8MT33 242 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 EGFRP00533 1210 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 F9P00740 461 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 CHGBP05060 677 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 BRAFP15056 766 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 MAP4P27816 1152 aaKnown RBP11.3□□□□□ -0.6
ACTN1-216ENST00000556083 CDH6P55285 790 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 TMEM132DQ14C87 1099 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 GRAMD1BQ3KR37 738 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 ZNF746Q6NUN9 644 aaPredicted RBP11.3□□□□□ -0.6
ACTN1-216ENST00000556083 UGT3A1Q6NUS8 523 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 RAET1EQ8TD07 263 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 AFG1LQ8WV93 481 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 TADA1Q96BN2 335 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 PHF20Q9BVI0 1012 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 SELENONQ9NZV5 590 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 SCHIP1Q9P0W5 487 aaPredicted RBP11.3□□□□□ -0.6
ACTN1-216ENST00000556083 EMSYQ7Z589 1322 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 CYP2D7A0A087X1C5 515 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 TOMM70O94826 608 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 FAM107AO95990 144 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 PNMA6AP0CW24 399 aaPredicted RBP11.3□□□□□ -0.6
ACTN1-216ENST00000556083 MAGEA9P43362 315 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 GCLCP48506 637 aaPredicted RBP11.3□□□□□ -0.6
ACTN1-216ENST00000556083 SLC12A1Q13621 1099 aa11.3□□□□□ -0.6
ACTN1-216ENST00000556083 KRT72Q14CN4 511 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms