RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 EVPLQ92817 2033 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-212ENST00000554467 MYO1FO00160 1098 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 ADCYAP1R1P41586 468 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 NAMPTP43490 491 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 CRELD2Q6UXH1 353 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-212ENST00000554467 DAAM2Q86T65 1068 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 HVCN1Q96D96 273 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 FBXL18Q96ME1 805 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 FNBP1Q96RU3 617 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 PCDHB18PQ96TA0 734 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 SYT11Q9BT88 431 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 RBM12Q9NTZ6 932 aaKnown RBP12.57□□□□□ -0.4
SHMT2-212ENST00000554467 HPCAL4Q9UM19 191 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 PCDHGC5Q9Y5F6 944 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 TMEM110-MUSTN1A8MSY1 372 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 MMEP08473 750 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 FNTAP49354 379 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 IRAK1P51617 712 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 RTP1P59025 263 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 CKAP4Q07065 602 aaKnown RBP12.57□□□□□ -0.4
SHMT2-212ENST00000554467 LAMTOR4Q0VGL1 99 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 PRPF4BQ13523 1007 aaKnown RBP12.57□□□□□ -0.4
SHMT2-212ENST00000554467 EGFL6Q8IUX8 553 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 SPATA4Q8NEY3 305 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 TPCN2Q8NHX9 752 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 SLC35G2Q8TBE7 412 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 LRRC1Q9BTT6 524 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 RBAKQ9NYW8 714 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-212ENST00000554467 NENFQ9UMX5 172 aa12.57□□□□□ -0.4
SHMT2-212ENST00000554467 MAFO75444 373 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-212ENST00000554467 C2CD6Q53TS8 623 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 MEI1Q5TIA1 1274 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 OR5B17Q8NGF7 314 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 HELQQ8TDG4 1101 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 PTPN18Q99952 460 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 CD248Q9HCU0 757 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 B4GALT5O43286 388 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 EXTL3O43909 919 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 GARTP22102 1010 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 GGCXP38435 758 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 KIF22Q14807 665 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 TDRD10Q5VZ19 366 aaKnown RBP12.56□□□□□ -0.4
SHMT2-212ENST00000554467 PSPC1Q8WXF1 523 aaKnown RBP12.56□□□□□ -0.4
SHMT2-212ENST00000554467 NT5C1BQ96P26 610 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 MPHOSPH6Q99547 160 aaKnown RBP12.56□□□□□ -0.4
SHMT2-212ENST00000554467 GBA2Q9HCG7 927 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-212ENST00000554467 GRIN2DO15399 1336 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 ADCY3O60266 1144 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 FTLP02792 175 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-212ENST00000554467 MYBL2P10244 700 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 CHRNB2P17787 502 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 TCP1P17987 556 aaKnown RBP12.56□□□□□ -0.4
SHMT2-212ENST00000554467 SNRPFP62306 86 aaKnown RBP12.56□□□□□ -0.4
SHMT2-212ENST00000554467 TMEM132AQ24JP5 1023 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 ILDR2Q71H61 639 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 EPS8L1Q8TE68 723 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 AFG1LQ8WV93 481 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 SUCLA2Q9P2R7 463 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-212ENST00000554467 DMGDHQ9UI17 866 aaKnown RBP12.56□□□□□ -0.4
SHMT2-212ENST00000554467 PNMA3Q9UL41 463 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 COG5Q9UP83 839 aa12.56□□□□□ -0.4
SHMT2-212ENST00000554467 BUB1BO60566 1050 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-212ENST00000554467 CETPP11597 493 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 TTLL4Q14679 1199 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 LRRC57Q8N9N7 239 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 ATP8B4Q8TF62 1192 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 CTNNBL1Q8WYA6 563 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-212ENST00000554467 IVNS1ABPQ9Y6Y0 642 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 LRRC37A2A6NM11 1700 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 UMODL1Q5DID0 1318 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 INO80B-WBP1J3KQ70 363 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 MAPK13O15264 365 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 HLA-DRAP01903 254 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 RFC5P40937 340 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 PIK3CAP42336 1068 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 RPS6KA1Q15418 735 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 WDR93Q6P2C0 686 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 PEX26Q7Z412 305 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 DPP9Q86TI2 863 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 CPNE8Q86YQ8 564 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 CEP120Q8N960 986 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 FAXDC2Q96IV6 333 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 INO80BQ9C086 356 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-212ENST00000554467 MINDY3Q9H8M7 445 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 ZSCAN5CA6NGD5 496 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-212ENST00000554467 P4HA2O15460 535 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 CLDN3O15551 220 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 MFAP3P55082 362 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 MAP9Q49MG5 647 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 PRAMEF19Q5SWL8 479 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 C10orf76Q5T2E6 689 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 EFCAB12Q6NXP0 572 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 ADAT2Q7Z6V5 191 aaKnown RBP12.55□□□□□ -0.4
SHMT2-212ENST00000554467 THNSL1Q8IYQ7 743 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 FAM71AQ8IYT1 594 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 TMC2Q8TDI7 906 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 SCFD2Q8WU76 684 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 TMEM174Q8WUU8 243 aa12.55□□□□□ -0.4
SHMT2-212ENST00000554467 BTBD6Q96KE9 485 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms