RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 COL6A3P12111 3177 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 SMIM28A0A1B0GU29 152 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 F8W810 466 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 NRP1O14786 923 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 EIF3DO15371 548 aaKnown RBP eCLIP15.4■□□□□ 0.06
PTCH1-226ENST00000553011 SLC34A2O95436 690 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 THP07101 528 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 OR1G1P47890 313 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 PLCB3Q01970 1234 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 STK4Q13043 487 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 PNOCQ13519 176 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 POSTNQ15063 836 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 NAB2Q15742 525 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 PTPROQ16827 1216 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 XKR4Q5GH76 650 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 SLFN12LQ6IEE8 588 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 KANK3Q6NY19 840 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 ALKAL1Q6UXT8 129 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 NELFCDQ8IXH7 590 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 KIAA0895Q8NCT3 520 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 ZNF507Q8TCN5 953 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 SCFD1Q8WVM8 642 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 POMGNT1Q8WZA1 660 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 RABGGTAQ92696 567 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 TMEM169Q96HH4 297 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 IGSF21Q96ID5 467 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 ZMAT2Q96NC0 199 aaKnown RBP15.4■□□□□ 0.06
PTCH1-226ENST00000553011 PPP1R10Q96QC0 940 aaKnown RBP15.4■□□□□ 0.06
PTCH1-226ENST00000553011 TMEM206Q9H813 350 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 MARCH5Q9NX47 278 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 LMCD1Q9NZU5 365 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 AGO2Q9UKV8 859 aaKnown RBP15.4■□□□□ 0.06
PTCH1-226ENST00000553011 FAN1Q9Y2M0 1017 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 PCDHGC5Q9Y5F6 944 aa15.4■□□□□ 0.06
PTCH1-226ENST00000553011 CASTOR2A6NHX0 329 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 PRPF40AO75400 957 aaKnown RBP15.39■□□□□ 0.05
PTCH1-226ENST00000553011 ALDH2P05091 517 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 CLTAP09496 248 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 IRS1P35568 1242 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 ACOT2P49753 483 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 ERVFC1P60507 584 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 TUSC3Q13454 348 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 ENOX2Q16206 610 aaKnown RBP15.39■□□□□ 0.05
PTCH1-226ENST00000553011 CLEC17AQ6ZS10 378 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 ZSWIM2Q8NEG5 633 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 ERCC4Q92889 916 aaPredicted RBP15.39■□□□□ 0.05
PTCH1-226ENST00000553011 CCDC34Q96HJ3 373 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 TIGD1Q96MW7 591 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 PAAF1Q9BRP4 392 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 CBWD1Q9BRT8 395 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 CPSF3Q9UKF6 684 aaKnown RBP15.39■□□□□ 0.05
PTCH1-226ENST00000553011 UBE4BO95155 1302 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 VWA8A3KMH1 1905 aa15.39■□□□□ 0.05
PTCH1-226ENST00000553011 TTC26A0AVF1 554 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 TGFB1I1O43294 461 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 RHOBTB3O94955 611 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 KCNE1P15382 129 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 UBE2HP62256 183 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 KRT17Q04695 432 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 UBE3AQ05086 875 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 SOX4Q06945 474 aaPredicted RBP15.38■□□□□ 0.05
PTCH1-226ENST00000553011 SPAG1Q07617 926 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 PSMD2Q13200 908 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 BMT2Q1RMZ1 405 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 SAAL1Q96ER3 474 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 VN1R3Q9BXE9 311 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 PCIF1Q9H4Z3 704 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 RPF1Q9H9Y2 349 aaKnown RBP15.38■□□□□ 0.05
PTCH1-226ENST00000553011 GOLGA2P5Q9HBQ8 144 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 TLR9Q9NR96 1032 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 CNTN3Q9P232 1028 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 LZTS1Q9Y250 596 aa15.38■□□□□ 0.05
PTCH1-226ENST00000553011 PRUNE2Q8WUY3 3088 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 CARNS1A5YM72 827 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 GOLGA8IPA6NC78 632 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 GOLGA8JA6NMD2 632 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 LACTBL1A8MY62 500 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 KINO60870 393 aaKnown RBP15.37■□□□□ 0.05
PTCH1-226ENST00000553011 GARTP22102 1010 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 KYAT1Q16773 422 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 TIGD5Q53EQ6 642 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 TCEAL5Q5H9L2 206 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 PLPP4Q5VZY2 271 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 ARMCX5Q6P1M9 558 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 CRELD2Q6UXH1 353 aaPredicted RBP15.37■□□□□ 0.05
PTCH1-226ENST00000553011 DDX53Q86TM3 631 aaKnown RBP15.37■□□□□ 0.05
PTCH1-226ENST00000553011 TMEM130Q8N3G9 435 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 CCDC47Q96A33 483 aaKnown RBP15.37■□□□□ 0.05
PTCH1-226ENST00000553011 C18orf25Q96B23 403 aaPredicted RBP15.37■□□□□ 0.05
PTCH1-226ENST00000553011 FAM212AQ96EL1 285 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 NSUN3Q9H649 340 aaKnown RBP15.37■□□□□ 0.05
PTCH1-226ENST00000553011 PLEKHA5Q9HAU0 1116 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 PUF60Q9UHX1 559 aaKnown RBP15.37■□□□□ 0.05
PTCH1-226ENST00000553011 SCN1AP35498 2009 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 EYSQ5T1H1 3165 aa15.37■□□□□ 0.05
PTCH1-226ENST00000553011 FSCN2O14926 492 aa15.36■□□□□ 0.05
PTCH1-226ENST00000553011 IGFBP6P24592 240 aaPredicted RBP15.36■□□□□ 0.05
PTCH1-226ENST00000553011 PPP2R3AQ06190 1150 aa15.36■□□□□ 0.05
PTCH1-226ENST00000553011 HSP90AA2PQ14568 343 aaPredicted RBP15.36■□□□□ 0.05
PTCH1-226ENST00000553011 KCNB1Q14721 858 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms