RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 TTLL1O95922 423 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 LMNB1P20700 586 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 ATP2B4P23634 1241 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 RRM1P23921 792 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 RWDD2BP57060 319 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 OVGP1Q12889 678 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 USP4Q13107 963 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SEPT2Q15019 361 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SLC1A5Q15758 541 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 EPC2Q52LR7 807 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 CYP4F22Q6NT55 531 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 CCDC174Q6PII3 467 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 RNF207Q6ZRF8 634 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 TPH2Q8IWU9 490 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 RPUSD2Q8IZ73 545 aaKnown RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SYT2Q8N9I0 419 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 DTX3LQ8TDB6 740 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 WDR60Q8WVS4 1066 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SLC5A5Q92911 643 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 IFT74Q96LB3 600 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 FIZ1Q96SL8 496 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 EPAS1Q99814 870 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 AGPAT1Q99943 283 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 HEMGNQ9BXL5 484 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 TYW1Q9NV66 732 aaKnown RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 IRAK4Q9NWZ3 460 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 CPSF2Q9P2I0 782 aaKnown RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 RASAL2Q9UJF2 1139 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 PHTF1Q9UMS5 762 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 DAGLAQ9Y4D2 1042 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 CDK5RAP2Q96SN8 1893 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 A0A1W2PPM1 405 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 PODXLO00592 558 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 BANF1O75531 89 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 CYP1A1P04798 512 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SPATA31D3P0C874 917 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 TM4SF1P30408 202 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 RPA3P35244 121 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 POLGP54098 1239 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 POLE2P56282 527 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 RHBDL3P58872 404 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SP4Q02446 784 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SLMAPQ14BN4 828 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 RBBP5Q15291 538 aaKnown RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 TMED2Q15363 201 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 CYP1B1Q16678 543 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 CTC1Q2NKJ3 1217 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 TAF1BQ53T94 588 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SLFN13Q68D06 897 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SPATA31D4Q6ZUB0 917 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 MTDHQ86UE4 582 aaKnown RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SLC47A2Q86VL8 602 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 GBP7Q8N8V2 638 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 ERMNQ8TAM6 284 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SHKBP1Q8TBC3 707 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 ETNPPLQ8TBG4 499 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 DNAJC9Q8WXX5 260 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 TEKT1Q969V4 418 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 ZNF333Q96JL9 665 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 MAGEB18Q96M61 343 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SERPINB12Q96P63 405 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 LRRC37BQ96QE4 947 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 LRRC27Q9C0I9 530 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 UBE2TQ9NPD8 197 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 EURLQ9NYK6 297 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 WDR35Q9P2L0 1181 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 WRAP73Q9P2S5 460 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 APEX2Q9UBZ4 518 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 ASIC3Q9UHC3 531 aa5.18□□□□□ -1.58
LIMA1-214ENST00000552783 G3BP2Q9UN86 482 aaKnown RBP5.18□□□□□ -1.58
LIMA1-214ENST00000552783 SYNGAP1Q96PV0 1343 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PITPNM2Q9BZ72 1349 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PNMA6FA0A0J9YX94 578 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 RASA4BC9J798 803 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 RASA4O43374 803 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 THAP12O43422 761 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 RNF8O76064 485 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 FAM13AO94988 1023 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ASMTLO95671 621 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 NEFHP12036 1026 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 NEK3P51956 506 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PPP3CAQ08209 521 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PKN2Q16513 984 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ACSBG2Q5FVE4 666 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 NOP9Q86U38 636 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 GALNT15Q8N3T1 639 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 RFWD2Q8NHY2 731 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 FBXO27Q8NI29 283 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PLEKHO2Q8TD55 490 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PSPC1Q8WXF1 523 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 MAML1Q92585 1016 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 NAP1L3Q99457 506 aaPredicted RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 CADM1Q9BY67 442 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PPP1R12CQ9BZL4 782 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 UBE2OQ9C0C9 1292 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 PCIF1Q9H4Z3 704 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 ALG13Q9NP73 1137 aaKnown RBP5.17□□□□□ -1.58
LIMA1-214ENST00000552783 HOMER2Q9NSB8 354 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 TMOD2Q9NZR1 351 aa5.17□□□□□ -1.58
LIMA1-214ENST00000552783 DCTN4Q9UJW0 460 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms