RNA–Protein interactions for RNA: ENST00000549271.1

DDX54-206, Transcript of DEAD-box helicase 54, humanhuman

TSL 2

Gene DDX54, Length 756 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-206ENST00000549271 SH2D3AQ9BRG2 576 aa13.56□□□□□ -0.24
DDX54-206ENST00000549271 IER2Q9BTL4 223 aa13.56□□□□□ -0.24
DDX54-206ENST00000549271 DHX33Q9H6R0 707 aaKnown RBP13.56□□□□□ -0.24
DDX54-206ENST00000549271 FBXW11Q9UKB1 542 aa13.56□□□□□ -0.24
DDX54-206ENST00000549271 COL4A3BPQ9Y5P4 624 aa13.56□□□□□ -0.24
DDX54-206ENST00000549271 JAK2O60674 1132 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 HNRNPA1P09651 372 aaKnown RBP eCLIP13.55□□□□□ -0.24
DDX54-206ENST00000549271 RPL17P18621 184 aaKnown RBP13.55□□□□□ -0.24
DDX54-206ENST00000549271 NCLP19338 710 aaKnown RBP13.55□□□□□ -0.24
DDX54-206ENST00000549271 HOXA11P31270 313 aaPredicted RBP13.55□□□□□ -0.24
DDX54-206ENST00000549271 RFC5P40937 340 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 CREMQ03060 361 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 USP41Q3LFD5 358 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 EARS2Q5JPH6 523 aaKnown RBP13.55□□□□□ -0.24
DDX54-206ENST00000549271 PLA2G4FQ68DD2 849 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 NEK8Q86SG6 692 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 KSR1Q8IVT5 923 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 C4orf19Q8IY42 314 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 ITFG1Q8TB96 612 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 WASF1Q92558 559 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 NLRP4Q96MN2 994 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 GPR62Q9BZJ7 368 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 HEBP1Q9NRV9 189 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 ZMIZ1Q9ULJ6 1067 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 LIMCH1Q9UPQ0 1083 aa13.55□□□□□ -0.24
DDX54-206ENST00000549271 CCDC194A0A1B0GVG4 234 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 ASAP2O43150 1006 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 HRO43593 1189 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 ECI2O75521 394 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 XBP1P17861 261 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 HOXA9P31269 272 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 RBM25P49756 843 aaKnown RBP13.54□□□□□ -0.24
DDX54-206ENST00000549271 NPEPPSP55786 919 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 SIM2Q14190 667 aaPredicted RBP13.54□□□□□ -0.24
DDX54-206ENST00000549271 PPP2R5DQ14738 602 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 PCBP1Q15365 356 aaKnown RBP eCLIP13.54□□□□□ -0.24
DDX54-206ENST00000549271 EPHA7Q15375 998 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 IL31Q6EBC2 164 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 FUT10Q6P4F1 479 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 NPAS3Q8IXF0 933 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 SMG8Q8ND04 991 aaKnown RBP13.54□□□□□ -0.24
DDX54-206ENST00000549271 PRPF31Q8WWY3 499 aaKnown RBP13.54□□□□□ -0.24
DDX54-206ENST00000549271 PSPC1Q8WXF1 523 aaKnown RBP13.54□□□□□ -0.24
DDX54-206ENST00000549271 HAS1Q92839 578 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 TNFRSF25Q93038 417 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 CEP170P1Q96L14 293 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 PLA2G2FQ9BZM2 168 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 UBN1Q9NPG3 1134 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 WRAP73Q9P2S5 460 aaPredicted RBP13.54□□□□□ -0.24
DDX54-206ENST00000549271 DMXL2Q8TDJ6 3036 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 SPAG17Q6Q759 2223 aa13.54□□□□□ -0.24
DDX54-206ENST00000549271 TICRRQ7Z2Z1 1910 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 AKAP13Q12802 2813 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 FAM205CA6NFA0 338 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 ARL5CA6NH57 179 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 C1QTNF9BB2RNN3 333 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 POU2F2P09086 479 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 C1QTNF9P0C862 333 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 CCR3P51677 355 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 SPIRE1Q08AE8 756 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 LAMTOR4Q0VGL1 99 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 NR5A1Q13285 461 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 PIK3AP1Q6ZUJ8 805 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 OTUD6AQ7L8S5 288 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 ZNF579Q8NAF0 562 aaKnown RBP13.53□□□□□ -0.24
DDX54-206ENST00000549271 KDF1Q8NAX2 398 aaPredicted RBP13.53□□□□□ -0.24
DDX54-206ENST00000549271 CNNM3Q8NE01 707 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 TCP11Q8WWU5 503 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 DNASE1L2Q92874 299 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 COL26A1Q96A83 441 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 COLEC11Q9BWP8 271 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 MINDY3Q9H8M7 445 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 MIOSQ9NXC5 875 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 KCNH3Q9ULD8 1083 aa13.53□□□□□ -0.24
DDX54-206ENST00000549271 GCN1Q92616 2671 aaKnown RBP13.52□□□□□ -0.24
DDX54-206ENST00000549271 MAN2B1O00754 1011 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 CCL16O15467 120 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 CCNT1O60563 726 aaKnown RBP13.52□□□□□ -0.25
DDX54-206ENST00000549271 C8AP07357 584 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 YWHABP31946 246 aaKnown RBP13.52□□□□□ -0.25
DDX54-206ENST00000549271 CNR2P34972 360 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 SCNN1GP51170 649 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 POU5F1BQ06416 359 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 PPM1LQ5SGD2 360 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 PRSS55Q6UWB4 352 aaPredicted RBP13.52□□□□□ -0.25
DDX54-206ENST00000549271 UNQ6494/PRO21346Q6UXR6 183 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.52□□□□□ -0.25
DDX54-206ENST00000549271 IFNLR1Q8IU57 520 aaPredicted RBP13.52□□□□□ -0.25
DDX54-206ENST00000549271 SLFN12Q8IYM2 578 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 TMEM143Q96AN5 459 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 CCDC51Q96ER9 411 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 GAD1Q99259 594 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 LXNQ9BS40 222 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 RNF39Q9H2S5 420 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 ZSWIM4Q9H7M6 989 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 ADAM28Q9UKQ2 775 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 NDRG2Q9UN36 371 aaKnown RBP13.52□□□□□ -0.25
DDX54-206ENST00000549271 VWA8A3KMH1 1905 aa13.52□□□□□ -0.25
DDX54-206ENST00000549271 SDK1Q7Z5N4 2213 aa13.51□□□□□ -0.25
DDX54-206ENST00000549271 BTBD18B2RXH4 712 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms