RNA–Protein interactions for RNA: ENST00000549162.5

SCAF11-212, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 1 (best) BASIC

Gene SCAF11, Length 3,934 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-212ENST00000549162 PCSK9Q8NBP7 692 aaKnown RBP5.34□□□□□ -1.55
SCAF11-212ENST00000549162 SHC3Q92529 594 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 CD101Q93033 1021 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 DMRTB1Q96MA1 342 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 AGBL1Q96MI9 1066 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 ACCSQ96QU6 501 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 SDF4Q9BRK5 362 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 MTG1Q9BT17 334 aaPredicted RBP5.34□□□□□ -1.55
SCAF11-212ENST00000549162 TTLL2Q9BWV7 592 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 PLVAPQ9BX97 442 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 VPS54Q9P1Q0 977 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 DDX20Q9UHI6 824 aaKnown RBP5.34□□□□□ -1.55
SCAF11-212ENST00000549162 RIPK3Q9Y572 518 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 SHROOM3Q8TF72 1996 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 ADM5C9JUS6 153 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 CPLX1O14810 134 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 GGPS1O95749 300 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 PLCG1P19174 1290 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 EIF1AXP47813 144 aaKnown RBP5.34□□□□□ -1.55
SCAF11-212ENST00000549162 ACTR2P61160 394 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 ATP2B2Q01814 1243 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 CNTN2Q02246 1040 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 SCAPQ12770 1279 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 CLEC16AQ2KHT3 1053 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 KMT5BQ4FZB7 885 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 AFMIDQ63HM1 303 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 MAMSTRQ6ZN01 415 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 CYS1Q717R9 158 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 FAM43AQ8N2R8 423 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 KHSRPQ92945 711 aaKnown RBP eCLIP5.34□□□□□ -1.554e-7■■■■□ 25
SCAF11-212ENST00000549162 SNX27Q96L92 541 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 GLIS2Q9BZE0 524 aaPredicted RBP5.34□□□□□ -1.55
SCAF11-212ENST00000549162 TMEM8AQ9HCN3 771 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 TBX21Q9UL17 535 aa5.34□□□□□ -1.55
SCAF11-212ENST00000549162 NFIBO00712 420 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 NDC80O14777 642 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 RIMBP2O15034 1052 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 GNAT1P11488 350 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 HCAR3P49019 387 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 CCZ1BP86790 482 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 CCZ1P86791 482 aaPredicted RBP5.34□□□□□ -1.56
SCAF11-212ENST00000549162 FKBP3Q00688 224 aaKnown RBP5.34□□□□□ -1.56
SCAF11-212ENST00000549162 PROX2Q3B8N5 592 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 ZACNQ401N2 412 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 RRP12Q5JTH9 1297 aaKnown RBP5.34□□□□□ -1.56
SCAF11-212ENST00000549162 ALG1LQ6GMV1 187 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 KIAA0907Q7Z7F0 614 aaPredicted RBP5.34□□□□□ -1.56
SCAF11-212ENST00000549162 CMTR2Q8IYT2 770 aaKnown RBP5.34□□□□□ -1.56
SCAF11-212ENST00000549162 TRMT2BQ96GJ1 504 aaKnown RBP5.34□□□□□ -1.56
SCAF11-212ENST00000549162 TAAR1Q96RJ0 339 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 IER2Q9BTL4 223 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 INO80BQ9C086 356 aaPredicted RBP5.34□□□□□ -1.56
SCAF11-212ENST00000549162 NCOA5Q9HCD5 579 aaKnown RBP5.34□□□□□ -1.56
SCAF11-212ENST00000549162 RNF186Q9NXI6 227 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 CAMSAP3Q9P1Y5 1249 aaPredicted RBP5.34□□□□□ -1.56
SCAF11-212ENST00000549162 PCDHA12Q9UN75 941 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 BCS1LQ9Y276 419 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.34□□□□□ -1.565e-7■■■■□ 21.9
SCAF11-212ENST00000549162 BACE2Q9Y5Z0 518 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 SCN5AQ14524 2016 aa5.34□□□□□ -1.56
SCAF11-212ENST00000549162 GRID2IPA4D2P6 1211 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 SPDYE3A6NKU9 549 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 O00370 1275 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 CYP1A2P05177 515 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 ZDHHC11BP0C7U3 371 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 ALAS1P13196 640 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 PNPLA4P41247 253 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 CHAF1AQ13111 956 aaPredicted RBP5.33□□□□□ -1.56
SCAF11-212ENST00000549162 NR5A1Q13285 461 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 ACVR2BQ13705 512 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 ENOX2Q16206 610 aaKnown RBP5.33□□□□□ -1.56
SCAF11-212ENST00000549162 PAPD7Q5XG87 772 aaKnown RBP5.33□□□□□ -1.56
SCAF11-212ENST00000549162 KRT79Q5XKE5 535 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 CKAP2LQ8IYA6 745 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 SPICE1Q8N0Z3 855 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 NECAB1Q8N987 351 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 NPLOC4Q8TAT6 608 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 RPS6KC1Q96S38 1066 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 SRPK1Q96SB4 655 aaKnown RBP5.33□□□□□ -1.56
SCAF11-212ENST00000549162 TRPV4Q9HBA0 871 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 NRBP2Q9NSY0 501 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 FRMPD2Q68DX3 1309 aaPredicted RBP5.33□□□□□ -1.56
SCAF11-212ENST00000549162 TTC26A0AVF1 554 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 HSP90AA1P07900 732 aaKnown RBP5.33□□□□□ -1.56
SCAF11-212ENST00000549162 AKAP17AQ02040 695 aaKnown RBP5.33□□□□□ -1.56
SCAF11-212ENST00000549162 MSANTD2Q6P1R3 559 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 PACS2Q86VP3 889 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 FAM126BQ8IXS8 530 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 ADAM32Q8TC27 787 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 IPO4Q8TEX9 1081 aaKnown RBP5.33□□□□□ -1.56
SCAF11-212ENST00000549162 ZNF408Q9H9D4 720 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 TBX20Q9UMR3 447 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 COLQQ9Y215 455 aaPredicted RBP5.33□□□□□ -1.56
SCAF11-212ENST00000549162 RWDD3Q9Y3V2 267 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 C2orf16Q68DN1 1984 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 ATP8B1O43520 1251 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 OLFM2O95897 454 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 HSPA6P17066 643 aa5.33□□□□□ -1.56
SCAF11-212ENST00000549162 TBXAS1P24557 533 aaPredicted RBP5.33□□□□□ -1.56
SCAF11-212ENST00000549162 PPP3CCP48454 512 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms