RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 TMC5Q6UXY8 1006 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 LRRC55Q6ZSA7 311 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 TBC1D10CQ8IV04 446 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 SLITRK4Q8IW52 837 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 TRAPPC12Q8WVT3 735 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 RSAD2Q8WXG1 361 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 AUTS2Q8WXX7 1259 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 GPATCH3Q96I76 525 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 SHDQ96IW2 340 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 TTC14Q96N46 770 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 ADAM2Q99965 735 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 MUC3BQ9H195 1237 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 NGRNQ9NPE2 291 aaKnown RBP7.46□□□□□ -1.22
LIMA1-204ENST00000549064 ZBTB40Q9NUA8 1239 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 DLGAP2Q9P1A6 1054 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 PUF60Q9UHX1 559 aaKnown RBP7.46□□□□□ -1.22
LIMA1-204ENST00000549064 PCDHA1Q9Y5I3 950 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 PKD1L2Q7Z442 2459 aa7.46□□□□□ -1.22
LIMA1-204ENST00000549064 LAMA4Q16363 1823 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 DOCK8Q8NF50 2099 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 C9IYK1 514 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 M0QZ92 97 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 KINO60870 393 aaKnown RBP7.45□□□□□ -1.22
LIMA1-204ENST00000549064 LRRN2O75325 713 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 FGAP02671 866 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 GLULP15104 373 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 HSD3B2P26439 372 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 MCM4P33991 863 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 RPS26P62854 115 aaKnown RBP7.45□□□□□ -1.22
LIMA1-204ENST00000549064 TBC1D8BQ0IIM8 1120 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 SEPT6Q14141 434 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 SMC1AQ14683 1233 aaKnown RBP7.45□□□□□ -1.22
LIMA1-204ENST00000549064 GNPTABQ3T906 1256 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 FBXW10Q5XX13 1052 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 XRRA1Q6P2D8 792 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 KCNT2Q6UVM3 1135 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 C1orf210Q8IVY1 113 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 TRIM42Q8IWZ5 723 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 MAML2Q8IZL2 1156 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-204ENST00000549064 FAM169BQ8N8A8 192 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 MRPL43Q8N983 215 aaKnown RBP7.45□□□□□ -1.22
LIMA1-204ENST00000549064 PLD4Q96BZ4 506 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 ACSF2Q96CM8 615 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-204ENST00000549064 INPP4AQ96PE3 977 aaPredicted RBP7.45□□□□□ -1.22
LIMA1-204ENST00000549064 AMNQ9BXJ7 453 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 CELF4Q9BZC1 486 aaKnown RBP7.45□□□□□ -1.22
LIMA1-204ENST00000549064 GINS2Q9Y248 185 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 SQORQ9Y6N5 450 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 NEDD4P46934 1319 aa7.45□□□□□ -1.22
LIMA1-204ENST00000549064 GSTTP1A0A1W2PQM5 241 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 DENND3A2RUS2 1198 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 SLC35F4A4IF30 521 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 NT5C1B-RDH14C9J2C7 533 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 GCOM1H8Y6P7 765 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-204ENST00000549064 FIBPO43427 364 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 ATP9AO75110 1047 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 N4BP1O75113 896 aaKnown RBP7.44□□□□□ -1.22
LIMA1-204ENST00000549064 PARP1P09874 1014 aaKnown RBP7.44□□□□□ -1.22
LIMA1-204ENST00000549064 POLR2MP0CAP2 368 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 INSRRP14616 1297 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 GPLD1P80108 840 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 ACAP1Q15027 740 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 ALX1Q15699 326 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 ASPRV1Q53RT3 343 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 RPS26P11Q5JNZ5 115 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-204ENST00000549064 PPM1JQ5JR12 505 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 CCDC149Q6ZUS6 474 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 OTOP3Q7RTS5 596 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 CELF2-AS1Q8N7Q2 184 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 PI4K2BQ8TCG2 481 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 OTUD7AQ8TE49 926 aaPredicted RBP7.44□□□□□ -1.22
LIMA1-204ENST00000549064 TMEM40Q8WWA1 233 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 GLG1Q92896 1179 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 ZNF558Q96NG5 402 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 CASD1Q96PB1 797 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 PPP1R16BQ96T49 567 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 RTKNQ9BST9 563 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 FOXQ1Q9C009 403 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 MIR1-1HGQ9H1L0 117 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 KAT14Q9H8E8 782 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 ST7Q9NRC1 585 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 WNT16Q9UBV4 365 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 USP18Q9UMW8 372 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 NOC2LQ9Y3T9 749 aaKnown RBP7.44□□□□□ -1.22
LIMA1-204ENST00000549064 SPEGQ15772 3267 aa7.44□□□□□ -1.22
LIMA1-204ENST00000549064 FASNP49327 2511 aaKnown RBP7.44□□□□□ -1.22
LIMA1-204ENST00000549064 MYH15Q9Y2K3 1946 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-204ENST00000549064 PRR5-ARHGAP8B1AHC4 643 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 AXIN1O15169 862 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 CXCL14O95715 111 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 SDHBP21912 280 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 TGM1P22735 817 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 SMCPP49901 116 aaPredicted RBP7.43□□□□□ -1.22
LIMA1-204ENST00000549064 METAP2P50579 478 aaKnown RBP eCLIP7.43□□□□□ -1.22
LIMA1-204ENST00000549064 ARHGAP8P85298 464 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 KRT76Q01546 638 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 KRT17Q04695 432 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 SLC35G1Q2M3R5 365 aa7.43□□□□□ -1.22
LIMA1-204ENST00000549064 MFSD6Q6ZSS7 791 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms