RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 ZNF302Q9NR11 478 aa9.27□□□□□ -0.93
VPS29-203ENST00000546588 GABBR1Q9UBS5 961 aa9.27□□□□□ -0.93
VPS29-203ENST00000546588 ATXN7L1Q9ULK2 861 aaPredicted RBP9.27□□□□□ -0.93
VPS29-203ENST00000546588 TELO2Q9Y4R8 837 aa9.27□□□□□ -0.93
VPS29-203ENST00000546588 ARHGEF35A5YM69 484 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 ZBTB42B2RXF5 422 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 DDX39AO00148 427 aaKnown RBP9.26□□□□□ -0.93
VPS29-203ENST00000546588 PDXKO00764 312 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 GH1P01241 217 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 TXNP10599 105 aaKnown RBP9.26□□□□□ -0.93
VPS29-203ENST00000546588 EEF1GP26641 437 aaKnown RBP9.26□□□□□ -0.93
VPS29-203ENST00000546588 GRNP28799 593 aaKnown RBP9.26□□□□□ -0.93
VPS29-203ENST00000546588 TCF7P36402 384 aaPredicted RBP9.26□□□□□ -0.93
VPS29-203ENST00000546588 PBX1P40424 430 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 ZNF75DP51815 510 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 PMS1P54277 932 aaKnown RBP9.26□□□□□ -0.93
VPS29-203ENST00000546588 SNRPFP62306 86 aaKnown RBP9.26□□□□□ -0.93
VPS29-203ENST00000546588 GTF2BQ00403 316 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 ACVR2BQ13705 512 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 MYBPC2Q14324 1141 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 LY6KQ17RY6 165 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 FAM160B1Q5W0V3 765 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 DPP9Q86TI2 863 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 SFR1Q86XK3 245 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 IRF2BP1Q8IU81 584 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 MYOCDQ8IZQ8 938 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 ATP8B4Q8TF62 1192 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 KIFAP3Q92845 792 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 UIMC1Q96RL1 719 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 SEMA6BQ9H3T3 888 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 XPNPEP1Q9NQW7 623 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 CYP26B1Q9NR63 512 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 FANCLQ9NW38 375 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 FLRT1Q9NZU1 646 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 LARSQ9P2J5 1176 aaKnown RBP9.26□□□□□ -0.93
VPS29-203ENST00000546588 CGNQ9P2M7 1197 aaKnown RBP9.26□□□□□ -0.93
VPS29-203ENST00000546588 LIMA1Q9UHB6 759 aaKnown RBP9.26□□□□□ -0.93
VPS29-203ENST00000546588 PRDM4Q9UKN5 801 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 CTNND2Q9UQB3 1225 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 SAMM50Q9Y512 469 aa9.26□□□□□ -0.93
VPS29-203ENST00000546588 TRIP12Q14669 1992 aaPredicted RBP9.25□□□□□ -0.93
VPS29-203ENST00000546588 RSPH10B2B2RC85 870 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 TNPO2O14787 897 aaKnown RBP9.25□□□□□ -0.93
VPS29-203ENST00000546588 ADCY6O43306 1168 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 HIP1RO75146 1068 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 TBCAO75347 108 aaKnown RBP9.25□□□□□ -0.93
VPS29-203ENST00000546588 MAFO75444 373 aaPredicted RBP9.25□□□□□ -0.93
VPS29-203ENST00000546588 ADCY5O95622 1261 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 RSPH10BP0C881 870 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 CYBAP13498 195 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 ATP1A3P13637 1013 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 PLS3P13797 630 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 YY1P25490 414 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 HOXC8P31273 242 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 HOXD13P35453 343 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 STAT5BP51692 787 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 CASP5P51878 434 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 FCGRTP55899 365 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 ENPEPQ07075 957 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 WDR78Q5VTH9 848 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 ISM2Q6H9L7 571 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 SWSAP1Q6NVH7 229 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 SLCO4C1Q6ZQN7 724 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 ZNF720Q7Z2F6 126 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 GALNT12Q8IXK2 581 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 LINC01465Q8N7H1 131 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 CTAGE1Q96RT6 745 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 FGFBP2Q9BYJ0 223 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 SMARCAD1Q9H4L7 1026 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 SUV39H2Q9H5I1 410 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 ATP6V0A4Q9HBG4 840 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 SRA1Q9HD15 236 aaKnown RBP9.25□□□□□ -0.93
VPS29-203ENST00000546588 SLC39A2Q9NP94 309 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 PDGFCQ9NRA1 345 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 INTS13Q9NVM9 706 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 KANSL3Q9P2N6 904 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 ITIH6Q6UXX5 1313 aa9.25□□□□□ -0.93
VPS29-203ENST00000546588 HTTP42858 3142 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 NPHP3-ACAD11A0A0J9YXS1 232 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 TRIM49BA6NDI0 452 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 H0YCG3 227 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 PPFIA4O75335 1185 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 MMP3P08254 477 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 IDEP14735 1019 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 ARL2P36404 184 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 POU5F1BQ06416 359 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 GRM2Q14416 872 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 KNOP1Q1ED39 458 aaKnown RBP9.24□□□□□ -0.93
VPS29-203ENST00000546588 HERC4Q5GLZ8 1057 aaPredicted RBP9.24□□□□□ -0.93
VPS29-203ENST00000546588 TCP11X2Q5H9J9 407 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 MAP3K21Q5TCX8 1036 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 ANKRD40Q6AI12 368 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 STXBP4Q6ZWJ1 553 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 GLIS3Q8NEA6 775 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 SPATA33Q96N06 139 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 C16orf70Q9BSU1 422 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 NFKBIZQ9BYH8 718 aa9.24□□□□□ -0.93
VPS29-203ENST00000546588 ZCCHC2Q9C0B9 1178 aaKnown RBP9.24□□□□□ -0.93
VPS29-203ENST00000546588 UPF3AQ9H1J1 476 aaKnown RBP9.24□□□□□ -0.93
VPS29-203ENST00000546588 CRISPLD1Q9H336 500 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms