RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 PDE4CQ08493 712 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 CALCOCO2Q13137 446 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 ALCAMQ13740 583 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 SLMAPQ14BN4 828 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 STYK1Q6J9G0 422 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 SLC39A4Q6P5W5 647 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 SV2AQ7L0J3 742 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 ARMC9Q7Z3E5 817 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 SYTL5Q8TDW5 730 aaPredicted RBP16.91■□□□□ 0.3
LDLR-204ENST00000545707 ZKSCAN4Q969J2 545 aaPredicted RBP16.91■□□□□ 0.3
LDLR-204ENST00000545707 HEMGNQ9BXL5 484 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 RAB20Q9NX57 234 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 ADCY1Q08828 1119 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 CNGA2Q16280 664 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 TAX1BP1Q86VP1 789 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 FAM228AQ86W67 206 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 FBXL13Q8NEE6 735 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 NT5C1BQ96P26 610 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 TAOK3Q9H2K8 898 aa16.91■□□□□ 0.3
LDLR-204ENST00000545707 TESPA1A2RU30 521 aaPredicted RBP16.9■□□□□ 0.3
LDLR-204ENST00000545707 MAPK4P31152 587 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 RPS6P62753 249 aaKnown RBP16.9■□□□□ 0.3
LDLR-204ENST00000545707 LACTB2Q53H82 288 aaPredicted RBP16.9■□□□□ 0.3
LDLR-204ENST00000545707 FAM133BQ5BKY9 247 aaKnown RBP16.9■□□□□ 0.3
LDLR-204ENST00000545707 ACAD10Q6JQN1 1059 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 RSBN1LQ6PCB5 846 aaPredicted RBP16.9■□□□□ 0.3
LDLR-204ENST00000545707 ANO5Q75V66 913 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 PIGWQ7Z7B1 504 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 PRUNE1Q86TP1 453 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 VTI1AQ96AJ9 217 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 R3HDM2Q9Y2K5 976 aaKnown RBP16.9■□□□□ 0.3
LDLR-204ENST00000545707 SP4Q02446 784 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 KYNUQ16719 465 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 PARP9Q8IXQ6 854 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 MORC4Q8TE76 937 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 POMGNT1Q8WZA1 660 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 SCLT1Q96NL6 688 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 LRRC19Q9H756 370 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 TMEM8AQ9HCN3 771 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 TCEAL9Q9UHQ7 104 aa16.9■□□□□ 0.3
LDLR-204ENST00000545707 SCP2P22307 547 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 RRM1P23921 792 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 GPC3P51654 580 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 PCNX4Q63HM2 1172 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 CYFIP1Q7L576 1253 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 OGFOD1Q8N543 542 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 GPATCH11Q8N954 259 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 ANKRD42Q8N9B4 389 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 KDM4CQ9H3R0 1056 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 KMT5AQ9NQR1 393 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 UVRAGQ9P2Y5 699 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 ADGRA3Q8IWK6 1321 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 FSCN2O14926 492 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 PLA2G6O60733 806 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 CFHP08603 1231 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 CLEC16AQ2KHT3 1053 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 SPDYE2Q495Y8 402 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 SEPT14Q6ZU15 432 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 ARHGEF2Q92974 986 aaKnown RBP16.89■□□□□ 0.29
LDLR-204ENST00000545707 FAM213AQ9BRX8 229 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 ST6GALNAC4Q9H4F1 302 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 ABCF3Q9NUQ8 709 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 TBK1Q9UHD2 729 aa16.89■□□□□ 0.29
LDLR-204ENST00000545707 TPX2Q9ULW0 747 aaKnown RBP16.89■□□□□ 0.29
LDLR-204ENST00000545707 MROH7Q68CQ1 1323 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 CHUKO15111 745 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 ASAP2O43150 1006 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 GBP1P32455 592 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 ITGA8P53708 1063 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 PSMC5P62195 406 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 PGM5Q15124 567 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 TNFAIP8L3Q5GJ75 292 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 CEP57Q86XR8 500 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 MAP4K3Q8IVH8 894 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 C4orf19Q8IY42 314 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 ANKS4BQ8N8V4 417 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 TMEM174Q8WUU8 243 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 DYDC1Q8WWB3 177 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 SGSM3Q96HU1 749 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 TMEM109Q9BVC6 243 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 KCNK9Q9NPC2 374 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.88■□□□□ 0.29
LDLR-204ENST00000545707 SAMD15Q9P1V8 674 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 COQ4Q9Y3A0 265 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 ZNF646O15015 1829 aaPredicted RBP16.88■□□□□ 0.29
LDLR-204ENST00000545707 MAPK13O15264 365 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 GH1P01241 217 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 IVDP26440 423 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 HSPA1LP34931 641 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 GJC1P36383 396 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 DMP1Q13316 513 aaPredicted RBP16.88■□□□□ 0.29
LDLR-204ENST00000545707 ZNF568Q3ZCX4 644 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 SPOPLQ6IQ16 392 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 PASD1Q8IV76 773 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 C12orf50Q8NA57 414 aaPredicted RBP16.88■□□□□ 0.29
LDLR-204ENST00000545707 GDAP1Q8TB36 358 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 CNKSR1Q969H4 720 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 RMDN3Q96TC7 470 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 DEFB129Q9H1M3 183 aa16.88■□□□□ 0.29
LDLR-204ENST00000545707 ZNF277Q9NRM2 450 aaPredicted RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms