RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, human

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP28-210	ENST00000542033	TCF7L1	Q9HCS4	588 aa		4.18	□□□□□ -1.74
USP28-210	ENST00000542033	GEMIN8	Q9NWZ8	242 aa	Known RBP	4.18	□□□□□ -1.74
USP28-210	ENST00000542033	ZIM2	Q9NZV7	527 aa		4.18	□□□□□ -1.74
USP28-210	ENST00000542033	AJAP1	Q9UKB5	411 aa	Predicted RBP	4.18	□□□□□ -1.74
USP28-210	ENST00000542033	LIMCH1	Q9UPQ0	1083 aa		4.18	□□□□□ -1.74
USP28-210	ENST00000542033	PCDHA13	Q9Y5I0	950 aa		4.18	□□□□□ -1.74
USP28-210	ENST00000542033	FZD7	O75084	574 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	ABLIM3	O94929	683 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	ZRANB2	O95218	330 aa	Known RBP eCLIP	4.17	□□□□□ -1.74
USP28-210	ENST00000542033	AMH	P03971	560 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	SNRPA1	P09661	255 aa	Known RBP	4.17	□□□□□ -1.74
USP28-210	ENST00000542033	C6	P13671	934 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	ALOX15	P16050	662 aa	Predicted RBP	4.17	□□□□□ -1.74
USP28-210	ENST00000542033	ATP5J	P18859	108 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	GUCY1A2	P33402	732 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	GDF5	P43026	501 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	SLC6A9	P48067	706 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	CDC42EP1	Q00587	391 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	C3orf36	Q3SXR2	165 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	RRP12	Q5JTH9	1297 aa	Known RBP	4.17	□□□□□ -1.74
USP28-210	ENST00000542033	MFSD14B	Q5SR56	506 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	AFMID	Q63HM1	303 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	EFCAB12	Q6NXP0	572 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	CRIP3	Q6Q6R5	217 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	FMNL3	Q8IVF7	1028 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	ZFP28	Q8NHY6	868 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	IL17D	Q8TAD2	202 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	CASKIN2	Q8WXE0	1202 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	JPH3	Q8WXH2	748 aa	Predicted RBP	4.17	□□□□□ -1.74
USP28-210	ENST00000542033	TFAP2C	Q92754	450 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	PGBD4	Q96DM1	585 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	TMX3	Q96JJ7	454 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	PLEKHG4B	Q96PX9	1271 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	NUP88	Q99567	741 aa	Predicted RBP	4.17	□□□□□ -1.74
USP28-210	ENST00000542033	ZNF747	Q9BV97	191 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	POGK	Q9P215	609 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	SERPINB13	Q9UIV8	391 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	SIK3	Q9Y2K2	1263 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	THRAP3	Q9Y2W1	955 aa	Known RBP	4.17	□□□□□ -1.74
USP28-210	ENST00000542033	IPP	Q9Y573	584 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	CFAP20	Q9Y6A4	193 aa	Known RBP	4.17	□□□□□ -1.74
USP28-210	ENST00000542033	EID1	Q9Y6B2	187 aa		4.17	□□□□□ -1.74
USP28-210	ENST00000542033	MYBBP1A	Q9BQG0	1328 aa	Known RBP	4.17	□□□□□ -1.74
USP28-210	ENST00000542033	TBKBP1	A7MCY6	615 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	CXorf49	A8MYA2	514 aa	Predicted RBP	4.16	□□□□□ -1.74
USP28-210	ENST00000542033	PJA2	O43164	708 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	SGTA	O43765	313 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	PEX11B	O96011	259 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	DDC	P20711	480 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	PDC	P20941	246 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	EDNRB	P24530	442 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	AKAP5	P24588	427 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	MGAT1	P26572	445 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	CLRN1	P58418	232 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	RAP2B	P61225	183 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	CREM	Q03060	361 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	IL10RA	Q13651	578 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	PPP2R5A	Q15172	486 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	BMT2	Q1RMZ1	405 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	ANKS6	Q68DC2	871 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	NAIF1	Q69YI7	327 aa	Predicted RBP	4.16	□□□□□ -1.74
USP28-210	ENST00000542033	GADL1	Q6ZQY3	521 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033		Q6ZRM9	215 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	HTR3D	Q70Z44	454 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	TTC7B	Q86TV6	843 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	DRC7	Q8IY82	874 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	KAT5	Q92993	513 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	RAB24	Q969Q5	203 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	ZNF503	Q96F45	646 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	CLPTM1L	Q96KA5	538 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	CAMKK2	Q96RR4	588 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	MNT	Q99583	582 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	MRI1	Q9BV20	369 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	LSM14B	Q9BX40	385 aa	Known RBP	4.16	□□□□□ -1.74
USP28-210	ENST00000542033	RHOBTB2	Q9BYZ6	727 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	CDH19	Q9H159	772 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	4.16	□□□□□ -1.74
USP28-210	ENST00000542033	SRRD	Q9UH36	339 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	PNMA8B	Q9ULN7	279 aa	Predicted RBP	4.16	□□□□□ -1.74
USP28-210	ENST00000542033	RUVBL1	Q9Y265	456 aa	Known RBP	4.16	□□□□□ -1.74
USP28-210	ENST00000542033	ACTL7A	Q9Y615	435 aa		4.16	□□□□□ -1.74
USP28-210	ENST00000542033	CCDC194	A0A1B0GVG4	234 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	PPFIA4	O75335	1185 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	OFD1	O75665	1012 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	RECQL4	O94761	1208 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	AMY1A	P04745	511 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	FPR1	P21462	350 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	CYP2C19	P33261	490 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	ALDH1A3	P47895	512 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	SCNN1G	P51170	649 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	RABGGTB	P53611	331 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	TUBA3C	Q13748	450 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	VPS72	Q15906	364 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	LSM12	Q3MHD2	195 aa	Known RBP	4.15	□□□□□ -1.75
USP28-210	ENST00000542033	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	4.15	□□□□□ -1.75
USP28-210	ENST00000542033	IFIT1B	Q5T764	474 aa	Known RBP	4.15	□□□□□ -1.75
USP28-210	ENST00000542033	THEMIS2	Q5TEJ8	643 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	TUBA3E	Q6PEY2	450 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	USP45	Q70EL2	814 aa		4.15	□□□□□ -1.75
USP28-210	ENST00000542033	CCAR1	Q8IX12	1150 aa	Known RBP	4.15	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms