RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PIK3R5Q8WYR1 880 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 WASF1Q92558 559 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 BRMS1Q9HCU9 246 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 PRMT7Q9NVM4 692 aaPredicted RBP17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 DPP7Q9UHL4 492 aa17.1■□□□□ 0.33
CLSTN3-213ENST00000541953 OTOGLQ3ZCN5 2332 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 I3L4J1 428 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 PRKCBP05771 671 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 C8AP07357 584 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 FSHRP23945 695 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 GPC5P78333 572 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 GPR65Q8IYL9 337 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 MAML2Q8IZL2 1156 aaPredicted RBP17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 PRIMPOLQ96LW4 560 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 TTPALQ9BTX7 342 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 GOLGA2P5Q9HBQ8 144 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 SLC2A4RGQ9NR83 387 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.09■□□□□ 0.334e-6■■□□□ 12.1
CLSTN3-213ENST00000541953 GDAQ9Y2T3 454 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 GPR179Q6PRD1 2367 aa17.09■□□□□ 0.33
CLSTN3-213ENST00000541953 NRG2O14511 850 aaPredicted RBP17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 C1RP00736 705 aa17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 ANAPC15P60006 121 aa17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 PRPF4BQ13523 1007 aaKnown RBP17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 NT5DC1Q5TFE4 455 aa17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 ELMSAN1Q6PJG2 1045 aa17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 DCLRE1AQ6PJP8 1040 aa17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 PADI6Q6TGC4 694 aa17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 CEP120Q8N960 986 aa17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 SLC7A14Q8TBB6 771 aa17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 FGF13Q92913 245 aa17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 TUFT1Q9NNX1 390 aa17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 MTF2Q9Y483 593 aaPredicted RBP17.08■□□□□ 0.32
CLSTN3-213ENST00000541953 N4BP3O15049 544 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 THP07101 528 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 XRCC6P12956 609 aaKnown RBP eCLIP17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 SOX4Q06945 474 aaPredicted RBP17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 NBR1Q14596 966 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 ANKRD1Q15327 319 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 ZNF174Q15697 407 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 PPM1LQ5SGD2 360 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 PHLDB3Q6NSJ2 640 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 ZBTB8OSQ8IWT0 167 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 TMEM130Q8N3G9 435 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 MCPH1Q8NEM0 835 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 PJA1Q8NG27 643 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 ING5Q8WYH8 240 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 NXPE3Q969Y0 559 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 KXD1Q9BQD3 176 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 POLR3CQ9BUI4 534 aaPredicted RBP17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 CDH7Q9ULB5 785 aa17.07■□□□□ 0.32
CLSTN3-213ENST00000541953 ACKR2O00590 384 aa17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 SP9P0CG40 484 aa17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 CYP11B2P19099 503 aa17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 RFX1P22670 979 aa17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 TKTP29401 623 aaKnown RBP17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 OR1D2P34982 312 aa17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 BRCC3P46736 316 aa17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 CLCNKBP51801 687 aa17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 SNW1Q13573 536 aaKnown RBP17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 SLC5A9Q2M3M2 681 aa17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 LIN9Q5TKA1 542 aa17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 PPP1R10Q96QC0 940 aaKnown RBP17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 DNMT3BQ9UBC3 853 aaKnown RBP17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 POLIQ9UNA4 740 aa17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 SIT1Q9Y3P8 196 aa17.06■□□□□ 0.32
CLSTN3-213ENST00000541953 CEP250Q9BV73 2442 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 MEFVO15553 781 aaPredicted RBP17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 SEC24BO95487 1268 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 HNRNPA1P09651 372 aaKnown RBP eCLIP17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 CD72P21854 359 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 FGFR3P22607 806 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 RPA1P27694 616 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 ID4P47928 161 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 CREMQ03060 361 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 MAPK6Q16659 721 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 TMEM132AQ24JP5 1023 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 AXDND1Q5T1B0 1012 aaPredicted RBP17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 NPAS3Q8IXF0 933 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 DCLK2Q8N568 766 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 DDX27Q96GQ7 796 aaKnown RBP17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 NACC1Q96RE7 527 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 PLA2G2FQ9BZM2 168 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 MTRRQ9UBK8 725 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 CDY1Q9Y6F8 540 aa17.05■□□□□ 0.32
CLSTN3-213ENST00000541953 COL4A2P08572 1712 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 ARHGEF35A5YM69 484 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 SHISA7A6NL88 538 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 LMNAP02545 664 aaKnown RBP17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 OR52Z1P0C646 297 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 HOXA9P31269 272 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 NAMPTP43490 491 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 NEK4P51957 841 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 STARD6P59095 220 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 RAB33AQ14088 237 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 TAS1R3Q7RTX0 852 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 C1orf210Q8IVY1 113 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 DEPTORQ8TB45 409 aa17.04■□□□□ 0.32
CLSTN3-213ENST00000541953 KCNG4Q8TDN1 519 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms