RNA–Protein interactions for RNA: ENST00000539982.5

CLSTN3-209, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-209ENST00000539982 NCOA5Q9HCD5 579 aaKnown RBP12.91□□□□□ -0.34
CLSTN3-209ENST00000539982 XPNPEP1Q9NQW7 623 aa12.91□□□□□ -0.34
CLSTN3-209ENST00000539982 HCFC1R1Q9NWW0 138 aa12.91□□□□□ -0.34
CLSTN3-209ENST00000539982 RGL1Q9NZL6 768 aa12.91□□□□□ -0.34
CLSTN3-209ENST00000539982 CACNG4Q9UBN1 327 aa12.91□□□□□ -0.34
CLSTN3-209ENST00000539982 SHISA7A6NL88 538 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 TBX3O15119 743 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 ADAM12O43184 909 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 B4GALT5O43286 388 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 RPS6KB1P23443 525 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 ARL2P36404 184 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 ELAVL2Q12926 359 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 CAPSQ13938 189 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 CTTNQ14247 550 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 PPP4R3AQ6IN85 833 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 KRT25Q7Z3Z0 450 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 CDR2LQ86X02 465 aaPredicted RBP12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 CELF5Q8N6W0 485 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 HASPINQ8TF76 798 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 HAS1Q92839 578 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 MCRS1Q96EZ8 462 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 DYDC2Q96IM9 177 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 PLA2G2FQ9BZM2 168 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 HEBP1Q9NRV9 189 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 GDE1Q9NZC3 331 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 RAB23Q9ULC3 237 aa12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 MRPS23Q9Y3D9 190 aaKnown RBP12.9□□□□□ -0.34
CLSTN3-209ENST00000539982 MAP1BP46821 2468 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 CHD8Q9HCK8 2581 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 CASTOR2A6NHX0 329 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 MAN2B1O00754 1011 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 SLC30A4O14863 429 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 MARCH6O60337 910 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 SLITRK3O94933 977 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 KIF4AO95239 1232 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 DEXIO95424 95 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 TDGF1P13385 188 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 GCFC2P16383 781 aaKnown RBP12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 OR1D2P34982 312 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 SPEM2Q0P670 501 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 PPP2R5DQ14738 602 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 LAIR1Q6GTX8 287 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 NEK8Q86SG6 692 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 TPH2Q8IWU9 490 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 ZNF687Q8N1G0 1237 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 NETO1Q8TDF5 533 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 ASAP3Q8TDY4 903 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 ING5Q8WYH8 240 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 DNASE1L2Q92874 299 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 ELSPBP1Q96BH3 223 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 CHAMP1Q96JM3 812 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 SNX14Q9Y5W7 946 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 NOTCH4Q99466 2003 aa12.89□□□□□ -0.35
CLSTN3-209ENST00000539982 CHD6Q8TD26 2715 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 LRP3O75074 770 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 DGAT1O75907 488 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 THP07101 528 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 RETP07949 1114 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 GLRA2P23416 452 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 HSPA4P34932 840 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 CYP4A11Q02928 519 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 PPM1JQ5JR12 505 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 NCAPH2Q6IBW4 605 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 TANGO2Q6ICL3 276 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 IER2Q9BTL4 223 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 CHRDQ9H2X0 955 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 AVENQ9NQS1 362 aaPredicted RBP12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 ANKEF1Q9NU02 776 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 ZFHX4Q86UP3 3567 aa12.88□□□□□ -0.35
CLSTN3-209ENST00000539982 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 CCDC194A0A1B0GVG4 234 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 PTGESO14684 152 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 CPLX1O14810 134 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 CCNT1O60563 726 aaKnown RBP12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 LYPLA2O95372 231 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 BAG4O95429 457 aaKnown RBP12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 RHOP08100 348 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 PTPN2P17706 415 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 FGFR3P22607 806 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 PSMA5P28066 241 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 SPIRE1Q08AE8 756 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 NAB2Q15742 525 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 LPAL2Q16609 132 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 SLC5A9Q2M3M2 681 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 POTEHQ6S545 545 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 PPP4R3CPQ6ZMV5 832 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 SLFN12Q8IYM2 578 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 PRIMPOLQ96LW4 560 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 AIFM3Q96NN9 605 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 NAP1L4Q99733 375 aaKnown RBP12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 HSD17B14Q9BPX1 270 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 MTRRQ9UBK8 725 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 NDRG2Q9UN36 371 aaKnown RBP12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 BACE2Q9Y5Z0 518 aa12.87□□□□□ -0.35
CLSTN3-209ENST00000539982 CDC45O75419 566 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 CCR3P51677 355 aa12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 EIF2AK1Q9BQI3 630 aaKnown RBP12.86□□□□□ -0.35
CLSTN3-209ENST00000539982 CXCL16Q9H2A7 254 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms