RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 RESTQ13127 1097 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 STAT4Q14765 748 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 TOR2AQ5JU69 321 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 AFMIDQ63HM1 303 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 LHFPL2Q6ZUX7 228 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 AFAP1L2Q8N4X5 818 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 LINC00476Q8WZB0 136 aa4.97□□□□□ -1.61
VPS13A-213ENST00000539950 HOXB13Q92826 284 aaPredicted RBP4.97□□□□□ -1.61
VPS13A-213ENST00000539950 BRINP1O60477 761 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 HLA-DOAP06340 250 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 SNRPA1P09661 255 aaKnown RBP4.96□□□□□ -1.62
VPS13A-213ENST00000539950 TYRP1P17643 537 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 MASP1P48740 699 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 TMPRSS15P98073 1019 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 GIMAP6Q6P9H5 292 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 MED25Q71SY5 747 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 RHOT2Q8IXI1 618 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 PQLC1Q8N2U9 271 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 OR56A1Q8NGH5 318 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 NTN5Q8WTR8 489 aaPredicted RBP4.96□□□□□ -1.62
VPS13A-213ENST00000539950 STON2Q8WXE9 905 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 FATE1Q969F0 183 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 CAVIN3Q969G5 261 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 COQ10AQ96MF6 247 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 UHRF1Q96T88 793 aaPredicted RBP4.96□□□□□ -1.62
VPS13A-213ENST00000539950 MRI1Q9BV20 369 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 ACE2Q9BYF1 805 aaPredicted RBP4.96□□□□□ -1.62
VPS13A-213ENST00000539950 PRDM13Q9H4Q3 707 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 LDAHQ9H6V9 325 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 GREM2Q9H772 168 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 RBM12Q9NTZ6 932 aaKnown RBP4.96□□□□□ -1.62
VPS13A-213ENST00000539950 KLHL11Q9NVR0 708 aa4.96□□□□□ -1.62
VPS13A-213ENST00000539950 EYA4O95677 639 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 HKR1P10072 659 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 EGR2P11161 476 aaPredicted RBP4.95□□□□□ -1.62
VPS13A-213ENST00000539950 MTHFD2P13995 350 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 GUCY1A2P33402 732 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 PLA2G5P39877 138 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 AVPR1BP47901 424 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 SEC24CP53992 1094 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 SCAPQ12770 1279 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 SP140Q13342 867 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 MUM1L1Q5H9M0 696 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 RRP12Q5JTH9 1297 aaKnown RBP4.95□□□□□ -1.62
VPS13A-213ENST00000539950 TSHZ3Q63HK5 1081 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 B3GNTL1Q67FW5 361 aaPredicted RBP4.95□□□□□ -1.62
VPS13A-213ENST00000539950 PRIMA1Q86XR5 153 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 MAPKAPK5Q8IW41 473 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 CHAC2Q8WUX2 184 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 ZSWIM1Q9BR11 485 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 SLKQ9H2G2 1235 aaPredicted RBP4.95□□□□□ -1.62
VPS13A-213ENST00000539950 C14orf119Q9NWQ9 140 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 ATP11BQ9Y2G3 1177 aa4.95□□□□□ -1.62
VPS13A-213ENST00000539950 CCDC78A2IDD5 438 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 CDKL5O76039 1030 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 PRSS23O95084 383 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 RAP2AP10114 183 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 ITGAMP11215 1152 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 FPR1P21462 350 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 HSD3B2P26439 372 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 MCAMP43121 646 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 GPR3P46089 330 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 ALDH1A3P47895 512 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 PER3P56645 1201 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 OCA2Q04671 838 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 NOMO1Q15155 1222 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 CT47A1Q5JQC4 288 aaPredicted RBP4.94□□□□□ -1.62
VPS13A-213ENST00000539950 ABHD17BQ5VST6 288 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 ADGRG3Q86Y34 549 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 ZNF764Q96H86 408 aaPredicted RBP4.94□□□□□ -1.62
VPS13A-213ENST00000539950 FUBP3Q96I24 572 aaKnown RBP eCLIP4.94□□□□□ -1.62
VPS13A-213ENST00000539950 BBC3Q96PG8 261 aaPredicted RBP4.94□□□□□ -1.62
VPS13A-213ENST00000539950 DNAJC28Q9NX36 388 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 RNF181Q9P0P0 153 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 SIK3Q9Y2K2 1263 aa4.94□□□□□ -1.62
VPS13A-213ENST00000539950 COL11A2P13942 1736 aaPredicted RBP4.94□□□□□ -1.62
VPS13A-213ENST00000539950 A0A1B0GTW7 788 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 PRKD3O94806 890 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 ATP5JP18859 108 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 FBLP22087 321 aaKnown RBP4.93□□□□□ -1.62
VPS13A-213ENST00000539950 SLC6A2P23975 617 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 SLC6A9P48067 706 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 MALLQ13021 153 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 SEPT2Q15019 361 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 ANO4Q32M45 955 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 STRIP1Q5VSL9 837 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 SDE2Q6IQ49 451 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 GPR149Q86SP6 731 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 TMEM132CQ8N3T6 1108 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 VOPP1Q96AW1 172 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 AHCYL2Q96HN2 611 aaKnown RBP4.93□□□□□ -1.62
VPS13A-213ENST00000539950 MYOCQ99972 504 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 SENP6Q9GZR1 1112 aaPredicted RBP4.93□□□□□ -1.62
VPS13A-213ENST00000539950 LANCL2Q9NS86 450 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 CCM2LQ9NUG4 571 aaPredicted RBP4.93□□□□□ -1.62
VPS13A-213ENST00000539950 MOCS1Q9NZB8 636 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 USP35Q9P2H5 1018 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 SLC23A1Q9UHI7 598 aa4.93□□□□□ -1.62
VPS13A-213ENST00000539950 AJAP1Q9UKB5 411 aaPredicted RBP4.93□□□□□ -1.62
VPS13A-213ENST00000539950 POLR2AP24928 1970 aaKnown RBP4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms