RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 ZBTB43O43298 467 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 PSMD10O75832 226 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 PSMC3P17980 439 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 AKAP5P24588 427 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 CCNE1P24864 410 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 GDI1P31150 447 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 PSMC5P62195 406 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 RING1Q06587 406 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 GRIK3Q13003 919 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 PTGDRQ13258 359 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 LRRC32Q14392 662 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 SLC5A9Q2M3M2 681 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 PLA2G4FQ68DD2 849 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 POTEHQ6S545 545 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 MAP4K3Q8IVH8 894 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 RNF149Q8NC42 400 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 BICD2Q8TD16 824 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 CPB2Q96IY4 423 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 AVENQ9NQS1 362 aaPredicted RBP13.41□□□□□ -0.26
YBX3-207ENST00000539204 LHX6Q9UPM6 363 aa13.41□□□□□ -0.26
YBX3-207ENST00000539204 TSPAN1O60635 241 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 IGHDP01880 384 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 HOXA6P31267 233 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 MLLT6P55198 1093 aaPredicted RBP13.4□□□□□ -0.26
YBX3-207ENST00000539204 NPEPPSP55786 919 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 ELAVL2Q12926 359 aaKnown RBP13.4□□□□□ -0.26
YBX3-207ENST00000539204 FOXC1Q12948 553 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 FAM78AQ5JUQ0 283 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 TTC22Q5TAA0 569 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 RNF43Q68DV7 783 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 CACNA2D4Q7Z3S7 1137 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 HASPINQ8TF76 798 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 TCP11Q8WWU5 503 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 CEP170P1Q96L14 293 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 PAAF1Q9BRP4 392 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 KLK14Q9P0G3 267 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 PARP2Q9UGN5 583 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 IGF2RP11717 2491 aa13.4□□□□□ -0.26
YBX3-207ENST00000539204 SETXQ7Z333 2677 aaKnown RBP13.39□□□□□ -0.27
YBX3-207ENST00000539204 ZNF197O14709 1029 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 ZNF263O14978 683 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 EPN2O95208 641 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 GSPT1P15170 499 aaKnown RBP13.39□□□□□ -0.27
YBX3-207ENST00000539204 CEBPBP17676 345 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 FCARP24071 287 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 RAP1GAPP47736 663 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 NOVA1P51513 510 aaKnown RBP13.39□□□□□ -0.27
YBX3-207ENST00000539204 SPIRE1Q08AE8 756 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 TUSC3Q13454 348 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 AAMPQ13685 434 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 C1orf228Q6PIY5 440 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 FERMT3Q86UX7 667 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 WDR5BQ86VZ2 330 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 ADAM33Q9BZ11 813 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 NXF3Q9H4D5 531 aaKnown RBP13.39□□□□□ -0.27
YBX3-207ENST00000539204 DHX33Q9H6R0 707 aaKnown RBP13.39□□□□□ -0.27
YBX3-207ENST00000539204 RBM12Q9NTZ6 932 aaKnown RBP13.39□□□□□ -0.27
YBX3-207ENST00000539204 CACNG4Q9UBN1 327 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 BRPF3Q9ULD4 1205 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 PPME1Q9Y570 386 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 NOTCH4Q99466 2003 aa13.39□□□□□ -0.27
YBX3-207ENST00000539204 CASTOR2A6NHX0 329 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 INO80B-WBP1J3KQ70 363 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 SLC27A2O14975 620 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 EDIL3O43854 480 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 DKC1O60832 514 aaKnown RBP eCLIP13.38□□□□□ -0.27
YBX3-207ENST00000539204 MICAL2O94851 1124 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 LRG1P02750 347 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 SPINK2P20155 84 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 RFC5P40937 340 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 QARSP47897 775 aaKnown RBP13.38□□□□□ -0.27
YBX3-207ENST00000539204 PTENP60484 403 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 Q4G0T1 1027 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 DGKKQ5KSL6 1271 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 PLA2G2CQ5R387 149 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 B3GNT9Q6UX72 402 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 ZNF579Q8NAF0 562 aaKnown RBP13.38□□□□□ -0.27
YBX3-207ENST00000539204 CSGALNACT1Q8TDX6 532 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 SMARCD2Q92925 531 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 ASB16Q96NS5 453 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 CORO1BQ9BR76 489 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 VPS45Q9NRW7 570 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 PCDHGA5Q9Y5G8 931 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 CDY1Q9Y6F8 540 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 LAMA5O15230 3695 aa13.38□□□□□ -0.27
YBX3-207ENST00000539204 TDRD15B5MCY1 1934 aaKnown RBP13.37□□□□□ -0.27
YBX3-207ENST00000539204 DSPP15924 2871 aaKnown RBP13.37□□□□□ -0.27
YBX3-207ENST00000539204 GOLGA8AA7E2F4 631 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 GOLGA8BA8MQT2 603 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 GIPC1O14908 333 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 RPP40O75818 363 aaKnown RBP13.37□□□□□ -0.27
YBX3-207ENST00000539204 KIF4AO95239 1232 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 ARF4P18085 180 aaPredicted RBP13.37□□□□□ -0.27
YBX3-207ENST00000539204 CDC27P30260 824 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 ELF1P32519 619 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 KPNA1P52294 538 aaPredicted RBP13.37□□□□□ -0.27
YBX3-207ENST00000539204 ZNF252P-AS1Q0IIN9 211 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 MXD4Q14582 209 aaPredicted RBP13.37□□□□□ -0.27
YBX3-207ENST00000539204 PRSS36Q5K4E3 855 aa13.37□□□□□ -0.27
YBX3-207ENST00000539204 CYP4A22Q5TCH4 519 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms