RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 KLHL7Q8IXQ5 586 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 GSPT2Q8IYD1 628 aaKnown RBP7.12□□□□□ -1.27
USP28-206ENST00000538224 SHCBP1Q8NEM2 672 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 NLGN2Q8NFZ4 835 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 ZNF564Q8TBZ8 553 aaPredicted RBP7.12□□□□□ -1.27
USP28-206ENST00000538224 HDAC7Q8WUI4 952 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 SLC20A1Q8WUM9 679 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 PSPC1Q8WXF1 523 aaKnown RBP7.12□□□□□ -1.27
USP28-206ENST00000538224 IFT81Q8WYA0 676 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 SEC14L1Q92503 715 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 ZNF653Q96CK0 615 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 ARHGEF26Q96DR7 871 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 CEP89Q96ST8 783 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 ZSWIM1Q9BR11 485 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 SH2D3AQ9BRG2 576 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 MSTO1Q9BUK6 570 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 MRPL4Q9BYD3 311 aaKnown RBP7.12□□□□□ -1.27
USP28-206ENST00000538224 OSGEPQ9NPF4 335 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 GOLGA6AQ9NYA3 693 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 RBAKQ9NYW8 714 aaPredicted RBP7.12□□□□□ -1.27
USP28-206ENST00000538224 SMARCAL1Q9NZC9 954 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 PNMA3Q9UL41 463 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 NFU1Q9UMS0 254 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 KCNH4Q9UQ05 1017 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 SBDSQ9Y3A5 250 aaKnown RBP eCLIP7.12□□□□□ -1.27
USP28-206ENST00000538224 ALG6Q9Y672 507 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 SCINQ9Y6U3 715 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 ZNF236Q9UL36 1845 aa7.12□□□□□ -1.27
USP28-206ENST00000538224 A0A0B4J269 797 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 ASB14A6NK59 587 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 NOP56O00567 594 aaKnown RBP7.11□□□□□ -1.27
USP28-206ENST00000538224 PODXLO00592 558 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 ASAP2O43150 1006 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 CYP26A1O43174 497 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 SPOPO43791 374 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 PHF2O75151 1096 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 LGR5O75473 907 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 SGPL1O95470 568 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 HLA-DRAP01903 254 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 FGGP02679 453 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 CAPN2P17655 700 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 CHRNB2P17787 502 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 CTNNA1P35221 906 aaKnown RBP7.11□□□□□ -1.27
USP28-206ENST00000538224 ACTN2P35609 894 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 NSFP46459 744 aaKnown RBP7.11□□□□□ -1.27
USP28-206ENST00000538224 CARSP49589 748 aaKnown RBP7.11□□□□□ -1.27
USP28-206ENST00000538224 DRG2P55039 364 aaKnown RBP7.11□□□□□ -1.27
USP28-206ENST00000538224 YWHAEP62258 255 aaKnown RBP7.11□□□□□ -1.27
USP28-206ENST00000538224 DR1Q01658 176 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 SP2Q02086 613 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 CNTN2Q02246 1040 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 BIRC3Q13489 604 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 KCTD2Q14681 263 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 CLEC16AQ2KHT3 1053 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 TREML2Q5T2D2 321 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 LIN9Q5TKA1 542 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 PRAMEF18Q5VWM3 479 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 CDCA2Q69YH5 1023 aaPredicted RBP7.11□□□□□ -1.27
USP28-206ENST00000538224 RUFY4Q6ZNE9 571 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 TAS1R3Q7RTX0 852 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 PLPPR4Q7Z2D5 763 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 TRMT1LQ7Z2T5 733 aaKnown RBP7.11□□□□□ -1.27
USP28-206ENST00000538224 ARMC9Q7Z3E5 817 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 CROCCP2Q86T23 111 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 SLC47A2Q86VL8 602 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 WDR49Q8IV35 697 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 BRSK2Q8IWQ3 736 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 ASAP3Q8TDY4 903 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 TAS1R2Q8TE23 839 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 CASKIN2Q8WXE0 1202 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 SEMA4DQ92854 862 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 FAXDC2Q96IV6 333 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 VCPIP1Q96JH7 1222 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 NUP85Q9BW27 656 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 ASCC2Q9H1I8 757 aaPredicted RBP7.11□□□□□ -1.27
USP28-206ENST00000538224 SPON1Q9HCB6 807 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 MRPL47Q9HD33 250 aaKnown RBP7.11□□□□□ -1.27
USP28-206ENST00000538224 TAS2R14Q9NYV8 317 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 BTBD7Q9P203 1132 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 BCCIPQ9P287 314 aaKnown RBP eCLIP7.11□□□□□ -1.27
USP28-206ENST00000538224 MCM3APO60318 1980 aa7.11□□□□□ -1.27
USP28-206ENST00000538224 ADGRA2Q96PE1 1338 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 GSTTP1A0A1W2PQM5 241 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 SOWAHBA6NEL2 793 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 HMGB1P1B2RPK0 211 aaPredicted RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 OGTO15294 1046 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 CLDN3O15551 220 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 PHACTR2O75167 634 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 TOM1L1O75674 476 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 C4BPAP04003 597 aaKnown RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 PRKCBP05771 671 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 MMEP08473 750 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 ATP4AP20648 1035 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 TCF7P36402 384 aaPredicted RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 CETN2P41208 172 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 FNTAP49354 379 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 CDR1P51861 262 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 EIF3BP55884 814 aaKnown RBP7.1□□□□□ -1.27
USP28-206ENST00000538224 RWDD2BP57060 319 aa7.1□□□□□ -1.27
USP28-206ENST00000538224 ERVK-9P63128 1117 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms