RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	DLGAP2	Q9P1A6	1054 aa		12.78	□□□□□ -0.36
CTNND1-238	ENST00000534647	C2orf16	Q68DN1	1984 aa		12.78	□□□□□ -0.36
CTNND1-238	ENST00000534647	FAM205C	A6NFA0	338 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	TADA2A	O75478	443 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	HNRNPA1	P09651	372 aa	Known RBP eCLIP	12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	SPATA31D3	P0C874	917 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	AKAP5	P24588	427 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	HOXA9	P31269	272 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	TUSC3	Q13454	348 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	HTR4	Q13639	388 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	HSP90AA2P	Q14568	343 aa	Predicted RBP	12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	CDCA2	Q69YH5	1023 aa	Predicted RBP	12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	POTEG	Q6S5H5	508 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	SPATA31D4	Q6ZUB0	917 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	RTL10	Q7L3V2	364 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	MCPH1	Q8NEM0	835 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	PIK3R5	Q8WYR1	880 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	B3GALT6	Q96L58	329 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	PIDD1	Q9HB75	910 aa		12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	PRMT7	Q9NVM4	692 aa	Predicted RBP	12.77	□□□□□ -0.37
CTNND1-238	ENST00000534647	SF3B1	O75533	1304 aa	Known RBP eCLIP	12.77	□□□□□ -0.37	8e-6	■■■■■ 107
CTNND1-238	ENST00000534647	NPTXR	O95502	500 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	POU2F2	P09086	479 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	SPATA31C1	P0DKV0	1188 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	TXK	P42681	527 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	STARD6	P59095	220 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	ELAVL2	Q12926	359 aa	Known RBP	12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	PDXDC1	Q6P996	788 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	LNX1	Q8TBB1	728 aa	Predicted RBP	12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	GPR152	Q8TDT2	470 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	PIGO	Q8TEQ8	1089 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	BORCS6	Q96GS4	357 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	CLSTN3	Q9BQT9	956 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	TTPAL	Q9BTX7	342 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	APOL6	Q9BWW8	343 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	POLR3F	Q9H1D9	316 aa	Predicted RBP	12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	TBC1D17	Q9HA65	648 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	TUFT1	Q9NNX1	390 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	PARP2	Q9UGN5	583 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	FBXW11	Q9UKB1	542 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	SIT1	Q9Y3P8	196 aa		12.76	□□□□□ -0.37
CTNND1-238	ENST00000534647	ZNF292	O60281	2723 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	BTBD18	B2RXH4	712 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	NEMF	O60524	1076 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	LMNA	P02545	664 aa	Known RBP	12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	TH	P07101	528 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	RPL17	P18621	184 aa	Known RBP	12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	FSHR	P23945	695 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	NAB2	Q15742	525 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	UVSSA	Q2YD98	709 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	RTP2	Q5QGT7	225 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	PRSS55	Q6UWB4	352 aa	Predicted RBP	12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	CDR2L	Q86X02	465 aa	Predicted RBP	12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	CATSPER3	Q86XQ3	398 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	SHD	Q96IW2	340 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	CCDC43	Q96MW1	224 aa	Known RBP	12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	NACC1	Q96RE7	527 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	POLR3C	Q9BUI4	534 aa	Predicted RBP	12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	C2orf40	Q9H1Z8	148 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	ARHGEF3	Q9NR81	526 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	KLK14	Q9P0G3	267 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	CDH7	Q9ULB5	785 aa		12.75	□□□□□ -0.37
CTNND1-238	ENST00000534647	ARID2	Q68CP9	1835 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	LRRIQ4	A6NIV6	560 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	ACKR2	O00590	384 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	PTGES	O14684	152 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	N4BP3	O15049	544 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	USO1	O60763	962 aa	Known RBP	12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	MYB	P10242	640 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	MUT	P22033	750 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	ID4	P47928	161 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	RAB33A	Q14088	237 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	DCLRE1A	Q6PJP8	1040 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	ZBTB8OS	Q8IWT0	167 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	GTF3C6	Q969F1	213 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	PHF12	Q96QT6	1004 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	PAAF1	Q9BRP4	392 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	DDX23	Q9BUQ8	820 aa	Known RBP	12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	PDZD7	Q9H5P4	517 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	CA14	Q9ULX7	337 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	NUMBL	Q9Y6R0	609 aa		12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	MTCL1	Q9Y4B5	1905 aa	Known RBP	12.74	□□□□□ -0.37
CTNND1-238	ENST00000534647	DOCK8	Q8NF50	2099 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	TDRD15	B5MCY1	1934 aa	Known RBP	12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	TMEM189-UBE2V1	I3L0A0	370 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	WNT7A	O00755	349 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	KIF4A	O95239	1232 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	CYP11B2	P19099	503 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	ATP2B1	P20020	1258 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	FGFR3	P22607	806 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	RPA1	P27694	616 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	ORC2	Q13416	577 aa	Predicted RBP	12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	PSMD5	Q16401	504 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	MAPK6	Q16659	721 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	ME3	Q16798	604 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	LIN9	Q5TKA1	542 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	FAM171A1	Q5VUB5	890 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	ZC3H14	Q6PJT7	736 aa	Known RBP	12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	MTSS1L	Q765P7	747 aa		12.73	□□□□□ -0.37
CTNND1-238	ENST00000534647	GET4	Q7L5D6	327 aa	Predicted RBP	12.73	□□□□□ -0.37

Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms