RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 HDAC10Q969S8 669 aa3.72□□□□□ -1.81
CD44-238ENST00000534296 CEP95Q96GE4 821 aa3.72□□□□□ -1.81
CD44-238ENST00000534296 PHACTR3Q96KR7 559 aa3.72□□□□□ -1.81
CD44-238ENST00000534296 MRI1Q9BV20 369 aa3.72□□□□□ -1.81
CD44-238ENST00000534296 KRTAP17-1Q9BYP8 105 aa3.72□□□□□ -1.81
CD44-238ENST00000534296 DMRT3Q9NQL9 472 aa3.72□□□□□ -1.81
CD44-238ENST00000534296 ZNF277Q9NRM2 450 aaPredicted RBP3.72□□□□□ -1.81
CD44-238ENST00000534296 AJAP1Q9UKB5 411 aaPredicted RBP3.72□□□□□ -1.81
CD44-238ENST00000534296 TRHDEQ9UKU6 1024 aa3.72□□□□□ -1.81
CD44-238ENST00000534296 SPEF1Q9Y4P9 236 aa3.72□□□□□ -1.81
CD44-238ENST00000534296 PPM1GO15355 546 aaPredicted RBP3.71□□□□□ -1.82
CD44-238ENST00000534296 RAMP2O60895 175 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 DTNBO60941 627 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 ALOX15P16050 662 aaPredicted RBP3.71□□□□□ -1.82
CD44-238ENST00000534296 IARSP41252 1262 aaKnown RBP3.71□□□□□ -1.82
CD44-238ENST00000534296 AVPR1BP47901 424 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 ANAPC15P60006 121 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 RNASE9P60153 205 aaKnown RBP3.71□□□□□ -1.82
CD44-238ENST00000534296 BLOC1S1P78537 153 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 SLC25A3Q00325 362 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 DPTQ07507 201 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 FAM50AQ14320 339 aaKnown RBP3.71□□□□□ -1.82
CD44-238ENST00000534296 ABCB5Q2M3G0 1257 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 EFCAB2Q5VUJ9 269 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 AFMIDQ63HM1 303 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 ANKS6Q68DC2 871 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 FOXR2Q6PJQ5 311 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 Q6ZVL8 140 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 MRGPRGQ86SM5 289 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 RHOT1Q8IXI2 618 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 PPM1NQ8N819 430 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 PRPF38AQ8NAV1 312 aaKnown RBP3.71□□□□□ -1.82
CD44-238ENST00000534296 C1orf162Q8NEQ5 155 aaPredicted RBP3.71□□□□□ -1.82
CD44-238ENST00000534296 NLGN4YQ8NFZ3 816 aaPredicted RBP3.71□□□□□ -1.82
CD44-238ENST00000534296 CCHCR1Q8TD31 782 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 MYEOVQ96EZ4 313 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 FUBP3Q96I24 572 aaKnown RBP eCLIP3.71□□□□□ -1.82
CD44-238ENST00000534296 FAM126AQ9BYI3 521 aaPredicted RBP3.71□□□□□ -1.82
CD44-238ENST00000534296 RNPEPQ9H4A4 650 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 CYP4F11Q9HBI6 524 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 AKIP1Q9NQ31 210 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 MAN1C1Q9NR34 630 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 TDP1Q9NUW8 608 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 RNF181Q9P0P0 153 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 INTUQ9ULD6 942 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 USP15Q9Y4E8 981 aaPredicted RBP3.71□□□□□ -1.82
CD44-238ENST00000534296 NOX1Q9Y5S8 564 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 FPGT-TNNI3KV9GXZ4 949 aa3.71□□□□□ -1.82
CD44-238ENST00000534296 hCG_2014768A0A024R1R8 64 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 GRXCR1A8MXD5 290 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 B3GALT2O43825 422 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 NDUFS2O75306 463 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 SLPIP03973 132 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 ZSCAN20P17040 1043 aaPredicted RBP3.7□□□□□ -1.82
CD44-238ENST00000534296 GUCY1A2P33402 732 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 ALDH1A3P47895 512 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 CHN2P52757 468 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 USP14P54578 494 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 GUCY1B3Q02153 619 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 TAP1Q03518 808 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 PPP3CAQ08209 521 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 MTMR1Q13613 665 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 FNDC7Q5VTL7 733 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 OTUD7BQ6GQQ9 843 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 ZNF529Q6P280 563 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 GADL1Q6ZQY3 521 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 RHOT2Q8IXI1 618 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 LCORLQ8N3X6 602 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 AOPEPQ8N6M6 819 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 SUPT20HQ8NEM7 779 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 FBXO18Q8NFZ0 1043 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 SLC35B2Q8TB61 432 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 NRG4Q8WWG1 115 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 HOXB13Q92826 284 aaPredicted RBP3.7□□□□□ -1.82
CD44-238ENST00000534296 FAXDC2Q96IV6 333 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 SLC2A13Q96QE2 648 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 BRINP2Q9C0B6 783 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 LDAHQ9H6V9 325 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 PCDH12Q9NPG4 1184 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 HOMER2Q9NSB8 354 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 CHST2Q9Y4C5 530 aa3.7□□□□□ -1.82
CD44-238ENST00000534296 MYBBP1AQ9BQG0 1328 aaKnown RBP3.7□□□□□ -1.82
CD44-238ENST00000534296 A0A087X1B8 175 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 DRGXA6NNA5 263 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 LEFTY2O00292 366 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 SGTAO43765 313 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 KATNA1O75449 491 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 NCR1O76036 304 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 NDUFA10O95299 355 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 DDCP20711 480 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 DDX6P26196 483 aaKnown RBP eCLIP3.69□□□□□ -1.82
CD44-238ENST00000534296 BMPR1AP36894 532 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 WASP42768 502 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 CDKN1CP49918 316 aaPredicted RBP3.69□□□□□ -1.82
CD44-238ENST00000534296 CDC42EP1Q00587 391 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 AMPD3Q01432 767 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 PTPN21Q16825 1174 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 PTPROQ16827 1216 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 SEM1Q6ZVN7 128 aa3.69□□□□□ -1.82
CD44-238ENST00000534296 MED25Q71SY5 747 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms