RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 ANKFY1Q9P2R3 1169 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 STK39Q9UEW8 545 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 USP25Q9UHP3 1055 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 ATG2AQ2TAZ0 1938 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 BRWD1Q9NSI6 2320 aa14.19□□□□□ -0.14
VPS28-216ENST00000533806 PVALEFA0A1B0GWK0 134 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 TTC26A0AVF1 554 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 C2orf71A6NGG8 1288 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 TISP43B9A030 160 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 OGTO15294 1046 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 CLTAP09496 248 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 CTSAP10619 480 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 HOXD13P35453 343 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 OR1G1P47890 313 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 LIG4P49917 911 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 OSTNP61366 133 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 SOX4Q06945 474 aaPredicted RBP14.18□□□□□ -0.14
VPS28-216ENST00000533806 ALCAMQ13740 583 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 SKIV2LQ15477 1246 aaKnown RBP14.18□□□□□ -0.14
VPS28-216ENST00000533806 ZBTB41Q5SVQ8 909 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 CD300LGQ6UXG3 332 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 UNC13DQ70J99 1090 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 TAS1R1Q7RTX1 841 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 TMC7Q7Z402 723 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 EFHBQ8N7U6 833 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 HPS3Q969F9 1004 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 PAGE5Q96GU1 130 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 ASB2Q96Q27 587 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 RPS6KC1Q96S38 1066 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 TOPORSQ9NS56 1045 aaPredicted RBP14.18□□□□□ -0.14
VPS28-216ENST00000533806 CHST7Q9NS84 486 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 CACNG4Q9UBN1 327 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 PRG3Q9Y2Y8 225 aaPredicted RBP14.18□□□□□ -0.14
VPS28-216ENST00000533806 PCDHB13Q9Y5F0 798 aa14.18□□□□□ -0.14
VPS28-216ENST00000533806 LINC01565O15544 149 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 KLRC4O43908 158 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 CSPG5O95196 566 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 GLP2RO95838 553 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 IGFBP6P24592 240 aaPredicted RBP14.17□□□□□ -0.14
VPS28-216ENST00000533806 TNFSF9P41273 254 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 NRIP1P48552 1158 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 YARSP54577 528 aaKnown RBP14.17□□□□□ -0.14
VPS28-216ENST00000533806 MRPS5P82675 430 aaKnown RBP14.17□□□□□ -0.14
VPS28-216ENST00000533806 CUL4BQ13620 913 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 ZBTB6Q15916 424 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 ENOX2Q16206 610 aaKnown RBP14.17□□□□□ -0.14
VPS28-216ENST00000533806 KYAT1Q16773 422 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 DUSP6Q16828 381 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 GLRA4Q5JXX5 417 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 TMEM184AQ6ZMB5 413 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 GRAMD1CQ8IYS0 662 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 VN1R2Q8NFZ6 395 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 MICAL1Q8TDZ2 1067 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 RABGGTAQ92696 567 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 BICD1Q96G01 975 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 ACCSQ96QU6 501 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 CDCA3Q99618 268 aaPredicted RBP14.17□□□□□ -0.14
VPS28-216ENST00000533806 COLEC11Q9BWP8 271 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 GPR62Q9BZJ7 368 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 BLZF1Q9H2G9 400 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 PLEKHA5Q9HAU0 1116 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 CPSF3Q9UKF6 684 aaKnown RBP14.17□□□□□ -0.14
VPS28-216ENST00000533806 TTC28Q96AY4 2481 aa14.17□□□□□ -0.14
VPS28-216ENST00000533806 MYH11P35749 1972 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 TMEM189-UBE2V1I3L0A0 370 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 PER2O15055 1255 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 NR1I2O75469 434 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 GCNT3O95395 438 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 CXCL14O95715 111 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 SOD2P04179 222 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 HARSP12081 509 aaKnown RBP14.16□□□□□ -0.14
VPS28-216ENST00000533806 BMP1P13497 986 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 SYKP43405 635 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 AFMP43652 599 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 ASIC1P78348 528 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 POU5F1Q01860 360 aaKnown RBP14.16□□□□□ -0.14
VPS28-216ENST00000533806 DLX2Q07687 328 aaPredicted RBP14.16□□□□□ -0.14
VPS28-216ENST00000533806 HSP90AA2PQ14568 343 aaPredicted RBP14.16□□□□□ -0.14
VPS28-216ENST00000533806 SMC1AQ14683 1233 aaKnown RBP14.16□□□□□ -0.14
VPS28-216ENST00000533806 PTPN14Q15678 1187 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 UPP1Q16831 310 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 LEXMQ3ZCV2 418 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 KIAA0319Q5VV43 1072 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 PLPP4Q5VZY2 271 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 SLFN12LQ6IEE8 588 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 CRELD2Q6UXH1 353 aaPredicted RBP14.16□□□□□ -0.14
VPS28-216ENST00000533806 RBM23Q86U06 439 aaKnown RBP14.16□□□□□ -0.14
VPS28-216ENST00000533806 GPR65Q8IYL9 337 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 CEP57L1Q8IYX8 460 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 FMR1NBQ8N0W7 255 aaPredicted RBP14.16□□□□□ -0.14
VPS28-216ENST00000533806 ENGASEQ8NFI3 743 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 ZNF507Q8TCN5 953 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 AUTS2Q8WXX7 1259 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 PPP2R3CQ969Q6 453 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 MSLNLQ96KJ4 702 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 TLE6Q9H808 572 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 ENTPD7Q9NQZ7 604 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 CLEC1BQ9P126 229 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 ADAM28Q9UKQ2 775 aa14.16□□□□□ -0.14
VPS28-216ENST00000533806 MUC3AQ02505 3323 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms