RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 VPS33BQ9H267 617 aa6□□□□□ -1.45
CD44-236ENST00000533222 SPC25Q9HBM1 224 aa6□□□□□ -1.45
CD44-236ENST00000533222 VCX3AQ9NNX9 186 aa6□□□□□ -1.45
CD44-236ENST00000533222 ARFGAP3Q9NP61 516 aa6□□□□□ -1.45
CD44-236ENST00000533222 TNFRSF12AQ9NP84 129 aa6□□□□□ -1.45
CD44-236ENST00000533222 GPR27Q9NS67 375 aa6□□□□□ -1.45
CD44-236ENST00000533222 KLC4Q9NSK0 619 aa6□□□□□ -1.45
CD44-236ENST00000533222 ZBTB40Q9NUA8 1239 aa6□□□□□ -1.45
CD44-236ENST00000533222 UBAP1Q9NZ09 502 aa6□□□□□ -1.45
CD44-236ENST00000533222 AIPL1Q9NZN9 384 aa6□□□□□ -1.45
CD44-236ENST00000533222 ZNF215Q9UL58 517 aaPredicted RBP6□□□□□ -1.45
CD44-236ENST00000533222 CCPG1Q9ULG6 757 aa6□□□□□ -1.45
CD44-236ENST00000533222 TIMM13Q9Y5L4 95 aaPredicted RBP6□□□□□ -1.45
CD44-236ENST00000533222 HCFC2Q9Y5Z7 792 aa6□□□□□ -1.45
CD44-236ENST00000533222 MRFAP1Q9Y605 127 aa6□□□□□ -1.45
CD44-236ENST00000533222 BZW2Q9Y6E2 419 aaKnown RBP6□□□□□ -1.45
CD44-236ENST00000533222 ABCC11Q96J66 1382 aa6□□□□□ -1.45
CD44-236ENST00000533222 TCOF1Q13428 1488 aaKnown RBP6□□□□□ -1.45
CD44-236ENST00000533222 FAM135AQ9P2D6 1515 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 CCDC18Q5T9S5 1454 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 GPR75-ASB3A0A0A6YYF3 556 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 A0A1W2PQ27 194 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 A0A1W2PQ64 194 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 A0A1W2PQC6 194 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 A0A1W2PQD8 194 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 C2orf81A6NN90 581 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 FOXN3O00409 490 aaPredicted RBP5.99□□□□□ -1.45
CD44-236ENST00000533222 ENPP3O14638 875 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 ZSCAN12O43309 604 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 SKAP2O75563 359 aaPredicted RBP5.99□□□□□ -1.45
CD44-236ENST00000533222 RASGRP1O95267 797 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 FGFR1OPO95684 399 aaKnown RBP5.99□□□□□ -1.45
CD44-236ENST00000533222 GLI1P08151 1106 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 BTF3P20290 206 aaKnown RBP5.99□□□□□ -1.45
CD44-236ENST00000533222 CASTP20810 708 aaKnown RBP5.99□□□□□ -1.45
CD44-236ENST00000533222 ATP5DP30049 168 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 TBX4P57082 545 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 UBXN2AP68543 259 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 HSPA14Q0VDF9 509 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 TUBB2AQ13885 445 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 SAFB2Q14151 953 aaKnown RBP eCLIP5.99□□□□□ -1.45
CD44-236ENST00000533222 SAFBQ15424 915 aaKnown RBP eCLIP5.99□□□□□ -1.45
CD44-236ENST00000533222 SNCBQ16143 134 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 ADRM1Q16186 407 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 CCDC40Q4G0X9 1142 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 ZC3H12BQ5HYM0 836 aaKnown RBP5.99□□□□□ -1.45
CD44-236ENST00000533222 ADGRF1Q5T601 910 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 VPS53Q5VIR6 699 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 KAZNQ674X7 775 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 BICRALQ6AI39 1079 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 SLC15A3Q8IY34 581 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 LZTR1Q8N653 840 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 APPL2Q8NEU8 664 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 LILRB1Q8NHL6 650 aaPredicted RBP5.99□□□□□ -1.45
CD44-236ENST00000533222 PLEKHO2Q8TD55 490 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 CACTINQ8WUQ7 758 aaKnown RBP5.99□□□□□ -1.45
CD44-236ENST00000533222 ZNF75CPQ92670 426 aaPredicted RBP5.99□□□□□ -1.45
CD44-236ENST00000533222 PTPRN2Q92932 1015 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 ERP27Q96DN0 273 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 CEP95Q96GE4 821 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 PAWRQ96IZ0 340 aaKnown RBP5.99□□□□□ -1.45
CD44-236ENST00000533222 CHAMP1Q96JM3 812 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 RPGRIP1Q96KN7 1286 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 UROC1Q96N76 676 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 TUBB2BQ9BVA1 445 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 FUT8Q9BYC5 575 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 CDIP1Q9H305 208 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 TRIM39Q9HCM9 518 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 PDLIM7Q9NR12 457 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 SFMBT1Q9UHJ3 866 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 POLG2Q9UHN1 485 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 HOOK1Q9UJC3 728 aaKnown RBP5.99□□□□□ -1.45
CD44-236ENST00000533222 MTUS1Q9ULD2 1270 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 PLA2G2DQ9UNK4 145 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 SIT1Q9Y3P8 196 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 ASB3Q9Y575 518 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 PCDHA9Q9Y5H5 950 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 TTC41PQ6P2S7 1318 aa5.99□□□□□ -1.45
CD44-236ENST00000533222 SAMD9Q5K651 1589 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.98□□□□□ -1.45
CD44-236ENST00000533222 A0A1W2PRQ8 180 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 FAM170AA1A519 330 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 RASSF10A6NK89 507 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 BTBD19C9JJ37 291 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 CYP27B1O15528 508 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 SNX2O60749 519 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 ADCY5O95622 1261 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 CRTAMO95727 393 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 GSTA2P09210 222 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 RBP3P10745 1247 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 RPS2P15880 293 aaKnown RBP5.98□□□□□ -1.45
CD44-236ENST00000533222 PNLIPP16233 465 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 HSPA1LP34931 641 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 HOXD12P35452 270 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 GJA9P57773 515 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 GPR85P60893 370 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 GABREP78334 506 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 MRPS35P82673 323 aaKnown RBP5.98□□□□□ -1.45
CD44-236ENST00000533222 ITIH3Q06033 890 aa5.98□□□□□ -1.45
CD44-236ENST00000533222 CBX3Q13185 183 aa5.98□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms