RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 SLFN12LQ6IEE8 588 aa21.69■■□□□ 1.06
CPSF1-209ENST00000532725 SNX27Q96L92 541 aa21.69■■□□□ 1.06
CPSF1-209ENST00000532725 EXOC7Q9UPT5 735 aa21.69■■□□□ 1.06
CPSF1-209ENST00000532725 PRG3Q9Y2Y8 225 aaPredicted RBP21.69■■□□□ 1.06
CPSF1-209ENST00000532725 GOLGA6L4A6NEF3 574 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 OGTO15294 1046 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 NR1I2O75469 434 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 KCNE1P15382 129 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 HOXD13P35453 343 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 COL19A1Q14993 1142 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 SKIV2LQ15477 1246 aaKnown RBP21.68■■□□□ 1.06
CPSF1-209ENST00000532725 KYAT1Q16773 422 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 GLRA4Q5JXX5 417 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 FAM26FQ5R3K3 315 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 ZBTB41Q5SVQ8 909 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 KRBA2Q6ZNG9 492 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 EPM2AIP1Q7L775 607 aaPredicted RBP21.68■■□□□ 1.06
CPSF1-209ENST00000532725 ADGRD2Q7Z7M1 963 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 VPS52Q8N1B4 723 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 ZNF507Q8TCN5 953 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 ZMAT2Q96NC0 199 aaKnown RBP21.68■■□□□ 1.06
CPSF1-209ENST00000532725 TCF25Q9BQ70 676 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 PAAF1Q9BRP4 392 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 MSTO1Q9BUK6 570 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 COLEC11Q9BWP8 271 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 PLEKHA5Q9HAU0 1116 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 NGRNQ9NPE2 291 aaKnown RBP21.68■■□□□ 1.06
CPSF1-209ENST00000532725 CNTN3Q9P232 1028 aa21.68■■□□□ 1.06
CPSF1-209ENST00000532725 TDRD15B5MCY1 1934 aaKnown RBP21.67■■□□□ 1.06
CPSF1-209ENST00000532725 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.67■■□□□ 1.06
CPSF1-209ENST00000532725 F8W810 466 aa21.67■■□□□ 1.06
CPSF1-209ENST00000532725 MYL1P05976 194 aa21.67■■□□□ 1.06
CPSF1-209ENST00000532725 ADRB2P07550 413 aa21.67■■□□□ 1.06
CPSF1-209ENST00000532725 TNFSF9P41273 254 aa21.67■■□□□ 1.06
CPSF1-209ENST00000532725 HYAL1Q12794 435 aa21.67■■□□□ 1.06
CPSF1-209ENST00000532725 SNW1Q13573 536 aaKnown RBP21.67■■□□□ 1.06
CPSF1-209ENST00000532725 POSTNQ15063 836 aa21.67■■□□□ 1.06
CPSF1-209ENST00000532725 TMC7Q7Z402 723 aa21.67■■□□□ 1.06
CPSF1-209ENST00000532725 FMR1NBQ8N0W7 255 aaPredicted RBP21.67■■□□□ 1.06
CPSF1-209ENST00000532725 MRPL43Q8N983 215 aaKnown RBP21.67■■□□□ 1.06
CPSF1-209ENST00000532725 ENGASEQ8NFI3 743 aa21.67■■□□□ 1.06
CPSF1-209ENST00000532725 RABGGTAQ92696 567 aa21.67■■□□□ 1.06
CPSF1-209ENST00000532725 TMEM206Q9H813 350 aa21.67■■□□□ 1.06
CPSF1-209ENST00000532725 CACNG4Q9UBN1 327 aa21.67■■□□□ 1.06
CPSF1-209ENST00000532725 CPSF3Q9UKF6 684 aaKnown RBP21.67■■□□□ 1.06
CPSF1-209ENST00000532725 BRWD1Q9NSI6 2320 aa21.66■■□□□ 1.06
CPSF1-209ENST00000532725 TTC26A0AVF1 554 aa21.66■■□□□ 1.06
CPSF1-209ENST00000532725 CASTOR2A6NHX0 329 aa21.66■■□□□ 1.06
CPSF1-209ENST00000532725 GTF2F1P35269 517 aaKnown RBP eCLIP21.66■■□□□ 1.06
CPSF1-209ENST00000532725 STXBP4Q6ZWJ1 553 aa21.66■■□□□ 1.06
CPSF1-209ENST00000532725 ZBP1Q9H171 429 aa21.66■■□□□ 1.06
CPSF1-209ENST00000532725 STK39Q9UEW8 545 aa21.66■■□□□ 1.06
CPSF1-209ENST00000532725 COG5Q9UP83 839 aa21.66■■□□□ 1.06
CPSF1-209ENST00000532725 TRIP11Q15643 1979 aa21.66■■□□□ 1.06
CPSF1-209ENST00000532725 HIDE1A8MVS5 230 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 EIF3DO15371 548 aaKnown RBP eCLIP21.65■■□□□ 1.06
CPSF1-209ENST00000532725 NCK2O43639 380 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 CXCL14O95715 111 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 CXCL8P10145 99 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 CTSAP10619 480 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 SOX4Q06945 474 aaPredicted RBP21.65■■□□□ 1.06
CPSF1-209ENST00000532725 HSP90AA2PQ14568 343 aaPredicted RBP21.65■■□□□ 1.06
CPSF1-209ENST00000532725 ENOX2Q16206 610 aaKnown RBP21.65■■□□□ 1.06
CPSF1-209ENST00000532725 CTC1Q2NKJ3 1217 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 PLPP4Q5VZY2 271 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 TAS1R1Q7RTX1 841 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 RNF168Q8IYW5 571 aaPredicted RBP21.65■■□□□ 1.06
CPSF1-209ENST00000532725 SYCP3Q8IZU3 236 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 SCFD1Q8WVM8 642 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 HLA-CQ95604 372 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 SLC39A2Q9NP94 309 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 ENTPD7Q9NQZ7 604 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 AGO2Q9UKV8 859 aaKnown RBP21.65■■□□□ 1.06
CPSF1-209ENST00000532725 IRAK3Q9Y616 596 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 ATG2AQ2TAZ0 1938 aa21.65■■□□□ 1.06
CPSF1-209ENST00000532725 C2orf71A6NGG8 1288 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 LACTBL1A8MY62 500 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 PER2O15055 1255 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 PRR29P0C7W0 189 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 IGFBP6P24592 240 aaPredicted RBP21.64■■□□□ 1.05
CPSF1-209ENST00000532725 ACOT2P49753 483 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 DPYDQ12882 1025 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 ADAM15Q13444 863 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 SMC1AQ14683 1233 aaKnown RBP21.64■■□□□ 1.05
CPSF1-209ENST00000532725 ZBTB6Q15916 424 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 KMT5BQ4FZB7 885 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 CRELD2Q6UXH1 353 aaPredicted RBP21.64■■□□□ 1.05
CPSF1-209ENST00000532725 RBM23Q86U06 439 aaKnown RBP21.64■■□□□ 1.05
CPSF1-209ENST00000532725 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.64■■□□□ 1.05
CPSF1-209ENST00000532725 POMGNT1Q8WZA1 660 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 PPP2R3CQ969Q6 453 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 PABPC5Q96DU9 382 aaKnown RBP21.64■■□□□ 1.05
CPSF1-209ENST00000532725 GPR62Q9BZJ7 368 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 IGFLR1Q9H665 355 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 TLE6Q9H808 572 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 RPF1Q9H9Y2 349 aaKnown RBP21.64■■□□□ 1.05
CPSF1-209ENST00000532725 SLC38A7Q9NVC3 462 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 ADAM28Q9UKQ2 775 aa21.64■■□□□ 1.05
CPSF1-209ENST00000532725 LILRB3O75022 631 aa21.63■■□□□ 1.05
CPSF1-209ENST00000532725 TADA2AO75478 443 aa21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms