RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	FMNL3	Q8IVF7	1028 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	TMEM174	Q8WUU8	243 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	LINC01599	Q8WXQ3	324 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	HERVK_113	Q902F9	699 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	SYN2	Q92777	582 aa	Predicted RBP	10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	BICD1	Q96G01	975 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	RNPC3	Q96LT9	517 aa	Known RBP	10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	FIZ1	Q96SL8	496 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	ADAM2	Q99965	735 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	MKNK1	Q9BUB5	465 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	FTHL17	Q9BXU8	183 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	MRPL4	Q9BYD3	311 aa	Known RBP	10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	FZD8	Q9H461	694 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	TMEM134	Q9H6X4	195 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	TMEM206	Q9H813	350 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	ARMCX3	Q9UH62	379 aa	Predicted RBP	10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	TBX20	Q9UMR3	447 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	PLAGL2	Q9UPG8	496 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	EVPL	Q92817	2033 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	CNTNAP2	Q9UHC6	1331 aa		10.27	□□□□□ -0.77
NXF1-209	ENST00000531474	SCN5A	Q14524	2016 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	TTLL13P	A6NNM8	815 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	ACKR2	O00590	384 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	EFCAB14	O75071	495 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	SLU7	O95391	586 aa	Known RBP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	AMH	P03971	560 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	EDN1	P05305	212 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	ARF4	P18085	180 aa	Predicted RBP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	NR2F2	P24468	414 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	AXL	P30530	894 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	HOXA11	P31270	313 aa	Predicted RBP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	WDR5	P61964	334 aa	Known RBP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	GOLGA8F	Q08AF8	430 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	GOLGA8DP	Q0D2H9	430 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	HSP90AA2P	Q14568	343 aa	Predicted RBP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	DSC3	Q14574	896 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	SHH	Q15465	462 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	ARHGAP29	Q52LW3	1261 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	TWF2	Q6IBS0	349 aa	Known RBP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	NOTUM	Q6P988	496 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	TRIM65	Q6PJ69	517 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	CDR2L	Q86X02	465 aa	Predicted RBP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	TRIM59	Q8IWR1	403 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	NELFCD	Q8IXH7	590 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	EHBP1	Q8NDI1	1231 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	GLIS3	Q8NEA6	775 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	HVCN1	Q96D96	273 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	TARS2	Q9BW92	718 aa	Known RBP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	TSGA10	Q9BZW7	698 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	TTYH3	Q9C0H2	523 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	ST6GALNAC4	Q9H4F1	302 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	HAUS4	Q9H6D7	363 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	MMRN2	Q9H8L6	949 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	LUC7L	Q9NQ29	371 aa	Known RBP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	CHST12	Q9NRB3	414 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	CXXC1	Q9P0U4	656 aa	Predicted RBP	10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	SIK3	Q9Y2K2	1263 aa		10.26	□□□□□ -0.77
NXF1-209	ENST00000531474	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	GTPBP10	A4D1E9	387 aa	Known RBP	10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	SOWAHD	A6NJG2	315 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	EIF3CL	B5ME19	914 aa	Known RBP	10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	ENPP3	O14638	875 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	HNRNPDL	O14979	420 aa	Known RBP	10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	KRT86	O43790	486 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	PPP1R37	O75864	691 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	PRPF6	O94906	941 aa	Known RBP	10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	NDUFA10	O95299	355 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	BMP8B	P34820	402 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	PSMC2	P35998	433 aa	Known RBP	10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	LIG4	P49917	911 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	GNG11	P61952	73 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	DEFB103A	P81534	67 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	GTF2B	Q00403	316 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	SPA17	Q15506	151 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	PTPN21	Q16825	1174 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	ATF7IP2	Q5U623	682 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	PRPF38B	Q5VTL8	546 aa	Known RBP	10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	EEF1DP3	Q658K8	133 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	RAD9B	Q6WBX8	426 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	FAM43B	Q6ZT52	329 aa	Predicted RBP	10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	TOGARAM2	Q6ZUX3	1019 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	CACNA2D4	Q7Z3S7	1137 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	RTN4RL1	Q86UN2	441 aa	Predicted RBP	10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	SLC9A9	Q8IVB4	645 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	MAP4K3	Q8IVH8	894 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	SYCP3	Q8IZU3	236 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	RNF169	Q8NCN4	708 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	CCDC42	Q96M95	316 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	ACCS	Q96QU6	501 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	EIF3C	Q99613	913 aa	Known RBP	10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	TRIM6	Q9C030	488 aa	Predicted RBP	10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	GBP3	Q9H0R5	595 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	PDZD7	Q9H5P4	517 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	L2HGDH	Q9H9P8	463 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	PLCB1	Q9NQ66	1216 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	RGS18	Q9NS28	235 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	C1orf112	Q9NSG2	853 aa		10.25	□□□□□ -0.77
NXF1-209	ENST00000531474	CEP72	Q9P209	647 aa		10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms