RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 OR7D4Q8NG98 312 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.23□□□□□ -1.41
CD44-230ENST00000528922 MDM1Q8TC05 714 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 HSPBAP1Q96EW2 488 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 BCO1Q9HAY6 547 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 RRP7BPQ9NSQ0 103 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 ZIM2Q9NZV7 527 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 KLHL42Q9P2K6 505 aa6.23□□□□□ -1.41
CD44-230ENST00000528922 NUP160Q12769 1436 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 YEATS2Q9ULM3 1422 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 KIAA1107Q9UPP5 1409 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 INSRP06213 1382 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 CROCC2H7BZ55 1655 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 CCDC154A6NI56 674 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 K7ESM1 405 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 PTPRTO14522 1441 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 HOXA3O43365 443 aaPredicted RBP6.22□□□□□ -1.41
CD44-230ENST00000528922 TSPY4P0CV99 314 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 TSPY10P0CW01 314 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 PF4V1P10720 104 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 GZMKP49863 264 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 RALBP1Q15311 655 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 LRRC41Q15345 812 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 NFE2Q16621 373 aaPredicted RBP6.22□□□□□ -1.41
CD44-230ENST00000528922 C3orf36Q3SXR2 165 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 PRAMEF14Q5SWL7 426 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 TRMT2AQ8IZ69 625 aaKnown RBP6.22□□□□□ -1.41
CD44-230ENST00000528922 PQLC1Q8N2U9 271 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 FBXO18Q8NFZ0 1043 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 LOXL4Q96JB6 756 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 ZNF512Q96ME7 567 aaPredicted RBP6.22□□□□□ -1.41
CD44-230ENST00000528922 SAMD11Q96NU1 681 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 CDH19Q9H159 772 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 ST6GALNAC2Q9UJ37 374 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 ZNF180Q9UJW8 692 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 ANKRD6Q9Y2G4 727 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 GIT1Q9Y2X7 761 aa6.22□□□□□ -1.41
CD44-230ENST00000528922 ZMYM4Q5VZL5 1548 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 ABCC5O15440 1437 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 UHRF1BP1Q6BDS2 1440 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 E2F8A0AVK6 867 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 FAM171A2A8MVW0 826 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 IL33O95760 270 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 SYN1P17600 705 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 SLC16A1P53985 500 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 APBA1Q02410 837 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 IL10RAQ13651 578 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 UAP1L1Q3KQV9 507 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 MFSD14BQ5SR56 506 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 FKBP15Q5T1M5 1219 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 SPTY2D1Q68D10 685 aaPredicted RBP6.21□□□□□ -1.42
CD44-230ENST00000528922 POLNQ7Z5Q5 900 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 D2HGDHQ8N465 521 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 JPH3Q8WXH2 748 aaPredicted RBP6.21□□□□□ -1.42
CD44-230ENST00000528922 ARL8AQ96BM9 186 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 IL17RAQ96F46 866 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 CEP95Q96GE4 821 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 BORCS6Q96GS4 357 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 CDC5LQ99459 802 aaKnown RBP6.21□□□□□ -1.42
CD44-230ENST00000528922 PDCD2LQ9BRP1 358 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 LDAHQ9H6V9 325 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 CFDP1Q9UEE9 299 aaPredicted RBP6.21□□□□□ -1.42
CD44-230ENST00000528922 SAP30BPQ9UHR5 308 aaKnown RBP6.21□□□□□ -1.42
CD44-230ENST00000528922 JAG2Q9Y219 1238 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 PCDHA13Q9Y5I0 950 aa6.21□□□□□ -1.42
CD44-230ENST00000528922 MAGI3Q5TCQ9 1506 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 KDM5DQ9BY66 1539 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 ATRNL1Q5VV63 1379 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 KIF15Q9NS87 1388 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 SPATA31E1Q6ZUB1 1445 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 SMG6Q86US8 1419 aaKnown RBP6.2□□□□□ -1.42
CD44-230ENST00000528922 PLEKHD1A6NEE1 506 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 ENDOD1O94919 500 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 PTPN7P35236 360 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 PER3P56645 1201 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 GJC2Q5T442 439 aaPredicted RBP6.2□□□□□ -1.42
CD44-230ENST00000528922 MAMDC4Q6UXC1 1216 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 MIER2Q8N344 545 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 STON2Q8WXE9 905 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 CAMKK2Q96RR4 588 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 UHRF1Q96T88 793 aaPredicted RBP6.2□□□□□ -1.42
CD44-230ENST00000528922 C7orf25Q9BPX7 421 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 CSRNP2Q9H175 543 aa6.2□□□□□ -1.42
CD44-230ENST00000528922 HECAQ9UBI9 543 aaPredicted RBP6.2□□□□□ -1.42
CD44-230ENST00000528922 CNOT11Q9UKZ1 510 aaKnown RBP6.2□□□□□ -1.42
CD44-230ENST00000528922 CAMSAP2Q08AD1 1489 aa6.19□□□□□ -1.42
CD44-230ENST00000528922 AMY1AP04745 511 aa6.19□□□□□ -1.42
CD44-230ENST00000528922 COMTP21964 271 aa6.19□□□□□ -1.42
CD44-230ENST00000528922 GUCY1A2P33402 732 aa6.19□□□□□ -1.42
CD44-230ENST00000528922 ANKS6Q68DC2 871 aa6.19□□□□□ -1.42
CD44-230ENST00000528922 TPH2Q8IWU9 490 aa6.19□□□□□ -1.42
CD44-230ENST00000528922 RHOT1Q8IXI2 618 aa6.19□□□□□ -1.42
CD44-230ENST00000528922 ELOA2Q8IYF1 753 aaPredicted RBP6.19□□□□□ -1.42
CD44-230ENST00000528922 ZNF808Q8N4W9 903 aaPredicted RBP6.19□□□□□ -1.42
CD44-230ENST00000528922 ZGPATQ8N5A5 531 aaKnown RBP6.19□□□□□ -1.42
CD44-230ENST00000528922 RAB24Q969Q5 203 aa6.19□□□□□ -1.42
CD44-230ENST00000528922 HDAC10Q969S8 669 aa6.19□□□□□ -1.42
CD44-230ENST00000528922 C8orf49Q96NF6 230 aa6.19□□□□□ -1.42
CD44-230ENST00000528922 LSM14BQ9BX40 385 aaKnown RBP6.19□□□□□ -1.42
CD44-230ENST00000528922 KCNH6Q9H252 994 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms