RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 KCNH3Q9ULD8 1083 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 ODF2LQ9ULJ1 636 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 FAN1Q9Y2M0 1017 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 PRG3Q9Y2Y8 225 aaPredicted RBP11.14□□□□□ -0.63
VPS28-204ENST00000526054 IPPQ9Y573 584 aa11.14□□□□□ -0.63
VPS28-204ENST00000526054 CACNA1HO95180 2353 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 PHLPP2Q6ZVD8 1323 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 A0A087X0B3 334 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 C2CD2LO14523 706 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 POLR2DO15514 142 aaKnown RBP11.13□□□□□ -0.63
VPS28-204ENST00000526054 SOD2P04179 222 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 ALDH2P05091 517 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 PFKFB1P16118 471 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 AXLP30530 894 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 OR1G1P47890 313 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 PEX3P56589 373 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 AMPD3Q01432 767 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 MBTD1Q05BQ5 628 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 NCBP1Q09161 790 aaKnown RBP11.13□□□□□ -0.63
VPS28-204ENST00000526054 RAD51AP2Q09MP3 1159 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 MAPK7Q13164 816 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 E2F4Q16254 413 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 GPR149Q86SP6 731 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 HACE1Q8IYU2 909 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 CEP57L1Q8IYX8 460 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 DAW1Q8N136 415 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 SMG8Q8ND04 991 aaKnown RBP11.13□□□□□ -0.63
VPS28-204ENST00000526054 ACSF2Q96CM8 615 aaPredicted RBP11.13□□□□□ -0.63
VPS28-204ENST00000526054 CPB2Q96IY4 423 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 KLHL5Q96PQ7 755 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 REEP2Q9BRK0 252 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 HERC2P3Q9BVR0 1158 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 APOL6Q9BWW8 343 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 EIF2AQ9BY44 585 aaKnown RBP11.13□□□□□ -0.63
VPS28-204ENST00000526054 TRIM6Q9C030 488 aaPredicted RBP11.13□□□□□ -0.63
VPS28-204ENST00000526054 IRF2BPLQ9H1B7 796 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 KMT5AQ9NQR1 393 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 PRMT7Q9NVM4 692 aaPredicted RBP11.13□□□□□ -0.63
VPS28-204ENST00000526054 MARCH5Q9NX47 278 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 LARSQ9P2J5 1176 aaKnown RBP11.13□□□□□ -0.63
VPS28-204ENST00000526054 LIMD1Q9UGP4 676 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 USP25Q9UHP3 1055 aa11.13□□□□□ -0.63
VPS28-204ENST00000526054 NPHP3-ACAD11A0A0J9YXS1 232 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 A0A1B0GVL5 298 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 ARL5CA6NH57 179 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 CCDC169A6NNP5 214 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 H0YCG3 227 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 ADH1AP07327 375 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 PLS3P13797 630 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 SYKP43405 635 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 GLUD2P49448 558 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 SCNN1GP51170 649 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 EFNA5P52803 228 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 NUBP1P53384 320 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 SMTNP53814 917 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 CACNB1Q02641 598 aaPredicted RBP11.12□□□□□ -0.63
VPS28-204ENST00000526054 MAPK6Q16659 721 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 ARSHQ5FYA8 562 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 ELMSAN1Q6PJG2 1045 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 C15orf39Q6ZRI6 1047 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 OTOP3Q7RTS5 596 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 COLGALT2Q8IYK4 626 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 FSIP1Q8NA03 581 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 FEZF2Q8TBJ5 459 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 SPIRE2Q8WWL2 714 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 ATOH1Q92858 354 aaPredicted RBP11.12□□□□□ -0.63
VPS28-204ENST00000526054 PRIMPOLQ96LW4 560 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 ZFP42Q96MM3 310 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 GAD1Q99259 594 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 MFSD1Q9H3U5 465 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 NXF3Q9H4D5 531 aaKnown RBP11.12□□□□□ -0.63
VPS28-204ENST00000526054 ZHX3Q9H4I2 956 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 PARVGQ9HBI0 331 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 POLD4Q9HCU8 107 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 MAN1C1Q9NR34 630 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 SSX2IPQ9Y2D8 614 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 HES2Q9Y543 173 aa11.12□□□□□ -0.63
VPS28-204ENST00000526054 CFAP54Q96N23 3096 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 FAM237AA0A1B0GTK4 181 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 H0Y858 1186 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 INPPL1O15357 1258 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 GALR2O43603 387 aaPredicted RBP11.11□□□□□ -0.63
VPS28-204ENST00000526054 LILRB3O75022 631 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 NR1I2O75469 434 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 GLUD1P00367 558 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 PRKCBP05771 671 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 ARF4P18085 180 aaPredicted RBP11.11□□□□□ -0.63
VPS28-204ENST00000526054 LIG1P18858 919 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 SCP2P22307 547 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 NPTX2P47972 431 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 ZNF131P52739 623 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 DSC1Q08554 894 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 FAM187BQ17R55 369 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 TMEM132AQ24JP5 1023 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 PPP4R3CPQ6ZMV5 832 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 DYMQ7RTS9 669 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 MYCT1Q8N699 235 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 TMEM105Q8N8V8 129 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 DDX12PQ92771 950 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 CCDC34Q96HJ3 373 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms